Locus 3182

Sequence ID 3L_DroMel_CAF1
Location 9,267,484 – 9,267,576
Length 92
Max. P 0.520532
window4960

overview

Window 0

Location 9,267,484 – 9,267,576
Length 92
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 85.14
Mean single sequence MFE -19.52
Consensus MFE -16.22
Energy contribution -16.61
Covariance contribution 0.39
Combinations/Pair 1.09
Mean z-score -1.51
Structure conservation index 0.83
SVM decision value -0.03
SVM RNA-class probability 0.520532
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9267484 92 + 23771897
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCGAAACUUGUUCUUCCUGGCGAUAUUUUCAGUUCUUUU-AU----------UU-----UCCC
.((((....((((((((..............))))))))((((((((((((.(((((......)))))...)))).))))))))-..----------))-----)).. ( -20.94)
>DroSec_CAF1 114230 92 + 1
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCGAAACUUGUUCUUCCUGGCGUUAUUUUCAGUUCUUUU-UU----------UU-----CCCU
.........((.(.((.((((((...(.(((((.((((((.((((((((...))))))))..)))))).))))))...))))))-.)----------).-----))). ( -21.30)
>DroSim_CAF1 114489 93 + 1
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCGAAACUUGUUCUUCUUGGCGAUAUUUUCAGUUCUUUUUUU----------UU-----CCCU
.((((....((((((((..............))))))))((((((((((((.(((((......)))))...)))).))))))))..)----------))-----)... ( -20.34)
>DroEre_CAF1 136921 86 + 1
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCAAAACUUGUUCUUCCUGGCGAUAUUUUCCGUUUUUUU-UU---------------------
.(((((.((((((((((..............))))))))))(((((((.....)))))))................)))))...-..--------------------- ( -19.34)
>DroYak_CAF1 132385 102 + 1
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCGAAACUUGUUCUUCCUGGCGAUAUUUUCAGUUCUUUU-UUUUUACUUUUUUU-----GCCC
.......((((((((((..............))))))))))((((((((...))))))))...(((((.......(((......-.....)))....))-----))). ( -20.84)
>DroAna_CAF1 115496 93 + 1
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCGAAACUUC---UUCC-GGCCACUUUUUUUUUACUUUU-UC----------UUACCACCCCC
.((((.(((((((((((..............))))))))))).(.(((((.....---))).-.)))...............))-))----------........... ( -14.34)
>consensus
CGAAACUUUGGCGUAACAAAAGAUUAGCAAAGUUAUGCCAAAAGAGCGAAACUUGUUCUUCCUGGCGAUAUUUUCAGUUCUUUU_UU__________UU_____CCCC
.((((..((((((((((..............))))))))))((((((((...))))))))...........))))................................. (-16.22 = -16.61 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:31 2006