| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,264,778 – 9,264,874 |
| Length | 96 |
| Max. P | 0.671405 |
| Location | 9,264,778 – 9,264,874 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9264778 96 + 23771897 AGUUGAAUGAAAAUGCAUGAGGGCG---------GGCUAAAGCGCCUCAAUUUACAUGGCAAUGGAGUAGCGAAA---GCCCAGUGGAUUACACUGGUCAGCAGGAUA--- .(((((.......(((.(((((((.---------.......)).))))).....(((....)))..)))((....---))((((((.....)))))))))))......--- ( -30.70) >DroPse_CAF1 124242 111 + 1 AGUGGAAUGGAAAUGCAUGGGGGCGUGGCCGUGAGGCUUAAGCGCCUCAAUUUACAUGGCCAUGGAGUAUUACAAAUACUACAGUGGAUUACACUGCACAGCCUGGUAUAU .((((((((......))).(((((((((((....))))...)))))))..)))))...((((.(((((((.....))))).(((((.....))))).....)))))).... ( -38.70) >DroEre_CAF1 134309 96 + 1 AGUUGAAUGGAAAUGCACGAGGGCG---------GGCUAAAGCGCCUCAAUUUACAUGGCAAUGGAGUAGCGAAA---GCCCAGCGGAUUACACUGGUCGGCAGGAUA--- .(((((.......(((..((((((.---------.......)).))))......(((....)))..)))((....---))((((.(.....).)))))))))......--- ( -25.30) >DroYak_CAF1 129707 96 + 1 CGUUGAAUGAAAAUGCAUGAGGGCG---------GGCUAAAGCGCCUCAAUUUACAUGGCAAUGGAGUAGCGAAA---GCCCAGUGGAUUACACUGCGCGGCAAUAUA--- (((((.(((.((((...(((((((.---------.......)).))))))))).)))..))))).....((....---((.(((((.....))))).)).))......--- ( -27.40) >DroAna_CAF1 113022 85 + 1 AGUUGAAUGGAAUUGCAUGAAGGCG---------GCCAACGGCUCCUCAAUUUACAUGGCCAUGAAGAA-----------UAAGUGGAUUACACUGCUCAGCAAG------ .(((((((((...((.((..(((.(---------(((...)))))))..))...))...))))......-----------..((((.....))))..)))))...------ ( -19.80) >DroPer_CAF1 124344 111 + 1 AGUGGAAUGGAAAUGCAUGGGGGCGUGGCCGUGAGGCUUAAGCGCCUCAAUUUACAUGGCCAUGGAGUAUUACAAAUACUACAGUGGAUUACACUGCACAGCCUGGUAUAU .((((((((......))).(((((((((((....))))...)))))))..)))))...((((.(((((((.....))))).(((((.....))))).....)))))).... ( -38.70) >consensus AGUUGAAUGGAAAUGCAUGAGGGCG_________GGCUAAAGCGCCUCAAUUUACAUGGCAAUGGAGUAGCGAAA___GCCCAGUGGAUUACACUGCUCAGCAAGAUA___ .((((.(((.((((...(((((((.................)).))))))))).)))..))))..................(((((.....)))))............... (-15.40 = -15.85 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:30 2006