Locus 318

Sequence ID 3L_DroMel_CAF1
Location 928,772 – 928,863
Length 91
Max. P 0.603431
window476

overview

Window 6

Location 928,772 – 928,863
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.88
Mean single sequence MFE -30.82
Consensus MFE -20.34
Energy contribution -20.03
Covariance contribution -0.30
Combinations/Pair 1.19
Mean z-score -1.50
Structure conservation index 0.66
SVM decision value 0.14
SVM RNA-class probability 0.603431
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 928772 91 - 23771897
ACUCAUGCGACA--------GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCUGCUCUGUAUGG
...(((((((((--------((..(.(((((...((((..(((((((...)))))))..)))).(((....))).)))))..)..)))).)).))))). ( -32.60)
>DroSec_CAF1 62746 91 - 1
ACUCAUGCGCCA--------GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCAGGUCUGUAUGG
.((((((((..(--------((...(((((((..(((...(((((((...))))))))))..)))))))...)))))))..))))(((....))).... ( -31.50)
>DroSim_CAF1 55738 91 - 1
ACUCAUGCGCCA--------GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCAGCUCUGUAUGG
...((((((..(--------((((((((((((..(((...(((((((...))))))))))..)))))))....((((....)))))))))).)))))). ( -34.60)
>DroEre_CAF1 66030 80 - 1
-------------------AGUUGCCAUGCGUCCUGGCCAAGGACACUCCGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCUGCUCUGCAUGG
-------------------.....(((((((...(((((.(((((((...)))))))........((.((((....)))).)).)))))...))))))) ( -27.70)
>DroYak_CAF1 65373 99 - 1
ACUCAUGCGCCAGUUCCUGCGUUGCCAUGCGUCCUGGCCAAGGACACUCGUUGUCCUCCGUCACGCAUAUGUGCUUGCACUUGGAGCUGCUCUGUAUGG
...((((((.(((((((((((..(((((((((..(((...((((((.....)))))))))..)))))..)).)).))))...)))))))...)))))). ( -36.80)
>DroAna_CAF1 69104 83 - 1
AUGCA---------------UUUGCUAUGCGUCCUGGCCAAGGACACGUACUGUCCUCCGUCACGCAUAUGUGUUCCCAUUUGAAGGUA-UAGGUAGAG
.....---------------((((((.(((((..(((...((((((.....)))))))))..)))))((((..(((......)))..))-)))))))). ( -21.70)
>consensus
ACUCAUGCGCCA________GUUGCUAUGCGUCCUGGCCAAGGACACCCAGUGUCCUCCGUCACGCAUAUGUGCUCGCAUUUGAGGCUGCUCUGUAUGG
........................((((((....((((..((((((.....))))))..)))).((....(((....))).....))......)))))) (-20.34 = -20.03 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:07 2006