Locus 3179

Sequence ID 3L_DroMel_CAF1
Location 9,261,258 – 9,261,354
Length 96
Max. P 0.701856
window4957

overview

Window 7

Location 9,261,258 – 9,261,354
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.97
Mean single sequence MFE -16.79
Consensus MFE -13.74
Energy contribution -13.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.35
SVM RNA-class probability 0.701856
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9261258 96 - 23771897
UUUUAGUGUUAAACUUUUUCCCAAUUAUUUUGCAUGUUUUAUGUACAAUAAAGAACGUGAUCCAUGCCAAUGCAAAGUAUACUAAAUAUGCUAAAA
.((((((((...(((((...........((.(((((..((((((.(......).))))))..))))).))...))))))))))))).......... ( -16.44)
>DroSec_CAF1 108006 95 - 1
-UUUAGUGUUCAACUUUUGCCCAAUUAUUUCGCAUGUUUUAUGUACAAUUAAGAACGUGAUCCAUGCCAAUGCAAAGUAUACUAAAUAUGCUAAAA
-((((((((...(((((.((......(((..(((((..((((((.(......).))))))..))))).)))))))))))))))))).......... ( -19.10)
>DroSim_CAF1 108261 95 - 1
-UUUAGUGUUCAACUUUUGCCCAAUUAUUUCGCAUGUUUUAUGUACAAUUAAGAACGUGAUCCAUGCCAAUGCAAAGUAUACUAAAUAUGCUAAAA
-((((((((...(((((.((......(((..(((((..((((((.(......).))))))..))))).)))))))))))))))))).......... ( -19.10)
>DroEre_CAF1 130817 94 - 1
--UCAAUGCUCAACUUUUGCCAAAUGAUGUCGCAUGUUUUAUGUACAAUUAAGAACGUGACCCAUGCCAAUGCAAAGUAUACUAAAUAUGCUAAAA
--..............((((.....(....)(((((..((((((.(......).))))))..)))))....))))((((((.....)))))).... ( -15.80)
>DroYak_CAF1 126006 94 - 1
--UUAAUGCUCAACUUUUGCCGAAUUAUUUCGCAUAUUUUAUGUACAAUUAAGAACGUGACCCAUGCCAAUGCAAAGUAUACUAAAUAUGCUAAAA
--..............((((.(((....)))((((...((((((.(......).))))))...))))....))))((((((.....)))))).... ( -13.50)
>consensus
_UUUAGUGUUCAACUUUUGCCCAAUUAUUUCGCAUGUUUUAUGUACAAUUAAGAACGUGAUCCAUGCCAAUGCAAAGUAUACUAAAUAUGCUAAAA
...............................(((((..((((((.(......).))))))..)))))........((((((.....)))))).... (-13.74 = -13.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:28 2006