Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,252,585 – 9,252,705 |
Length | 120 |
Max. P | 0.711832 |
Location | 9,252,585 – 9,252,705 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -33.22 |
Consensus MFE | -30.10 |
Energy contribution | -30.05 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.06 |
Mean z-score | -1.19 |
Structure conservation index | 0.91 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9252585 120 - 23771897 UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUGGAGAUGCCCAGCGACAUGAACGGCUUGCUGAAGUC ................((((.......))))((((..((((((..(((((.((((((((.(.(((.(((........)))))).).)))))))).)))...))..))))))..))))... ( -36.50) >DroVir_CAF1 149356 120 - 1 UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUUUGCUUCACUGGUUUCUUAAUCAUGAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC .....(((.((.....((((.......))))((((((..(.....).(((.((((((((.(.(((.(((((....)))))))).).)))))))).))).)))))).))..)))....... ( -36.00) >DroPse_CAF1 112453 120 - 1 UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACUCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUUGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC .....(((.((.....((((.......))))((((((..(((((....)).((((((..(((.....))).......(((....))).)))))))))..)))))).))..)))....... ( -29.50) >DroGri_CAF1 97602 120 - 1 UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUUUGCUUCACUGGCUUCUUAAUCAUGAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUGAAGUC ................((((.......))))((((..((((((..(((((.((((((((.(.(((.(((........)))))).).)))))))).)))...))..))))))..))))... ( -33.80) >DroMoj_CAF1 115856 120 - 1 UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUUUGCUUCACUGGCUUCUUAAUCAUAAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC ....(((......((((((((((((.(((((..((((((((.....((((...))))..)))))).))..))))).))))))..)))))).....)))........(((((....))))) ( -34.00) >DroPer_CAF1 112531 120 - 1 UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACUCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUUGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC .....(((.((.....((((.......))))((((((..(((((....)).((((((..(((.....))).......(((....))).)))))))))..)))))).))..)))....... ( -29.50) >consensus UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC ....(((......((((((.(((((.(((((..((((((((.((...(....)...)).)))))).))..))))).)))))...)))))).....)))........(((((....))))) (-30.10 = -30.05 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006