Locus 3173

Sequence ID 3L_DroMel_CAF1
Location 9,241,735 – 9,241,838
Length 103
Max. P 0.881010
window4948

overview

Window 8

Location 9,241,735 – 9,241,838
Length 103
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 79.10
Mean single sequence MFE -23.73
Consensus MFE -21.33
Energy contribution -20.67
Covariance contribution -0.66
Combinations/Pair 1.17
Mean z-score -1.05
Structure conservation index 0.90
SVM decision value 0.92
SVM RNA-class probability 0.881010
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9241735 103 + 23771897
CCUAAUAACC-AAUUUUGAAGACUUUUUGUGGCUAAACUAAAUUUCUUUUAGUGUAAAAAGGACAGCCUUGCGGCAGCAGCAAGUUGGUUUAUUUUGCGCUGGC
........((-......(((((..(((.((......)).)))..))))).(((((((((..(((...(((((.......)))))...)))..))))))))))). ( -24.30)
>DroSec_CAF1 96316 94 + 1
UC----------AUUUUAUAGACUUACUGUGGCUAAACUAAAUUUCUUUCAGUGUAAAAAGGACAGCCUUGCGGCAGCAGCAAGUUGGUUUAUUUUGCGCUGGC
..----------...((((((.....))))))................(((((((((((..(((...(((((.......)))))...)))..))))))))))). ( -24.10)
>DroYak_CAF1 113610 104 + 1
GCUAGAAAAUACAUUUUAAACACUUAACAUUAGGCAAUAAAAUUUCUUGUAGUGCAAAAAGGACAGCCUUGUGGCAGCAGCAAGUUGGUUUAUUUUGCGCUGGC
(((((.................((.......))((((..(((((.(((((.((((...((((....))))...))).).)))))..)))))...)))).))))) ( -22.80)
>consensus
CCUA__AA____AUUUUAAAGACUUAAUGUGGCUAAACUAAAUUUCUUUUAGUGUAAAAAGGACAGCCUUGCGGCAGCAGCAAGUUGGUUUAUUUUGCGCUGGC
.................................................((((((((((..(((...(((((.......)))))...)))..)))))))))).. (-21.33 = -20.67 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:19 2006