| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,240,479 – 9,240,573 |
| Length | 94 |
| Max. P | 0.506851 |
| Location | 9,240,479 – 9,240,573 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 68.77 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -14.58 |
| Energy contribution | -14.25 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9240479 94 + 23771897 GGCCGUCGUACCUACCACUAUUUGCUGAGUGGUUUGGUAAGUGUUACUGCCCCCCCCCAA-----AAACCCAACCAGUAAGCGCC----------CCGAAACAAAGGCU ((((.(((((((.((((((........))))))..)))).(((((((((...........-----.........)))).))))).----------.)))......)))) ( -23.75) >DroSec_CAF1 95033 90 + 1 GGCCGUCGCACCUACCACUAUUUGCUGAGUGGCUUGGUAAGUGUUACAGCCCC---CCAA-----AAACCCAACCAGCAGGCAC-----------CCGAGACAAAGGCC ((((((.((((.(((((((((((...))))))..))))).)))).)).(((..---....-----..............)))..-----------..........)))) ( -23.65) >DroSim_CAF1 95349 91 + 1 GGCCGUCGCACCUACCACUAUUUGCUGAGUGGUUUGGUAAGUGUUACUGCCCC--ACCAA-----AAACCCAACCAGCAAACAC-----------CCGAGACAAAGGCU (((((((.............(((((((..(((((((((..(.((....)))..--)))))-----)...)))..)))))))(..-----------..).)))...)))) ( -22.10) >DroEre_CAF1 117795 92 + 1 GGCCGCCGCACCUACCACUAUUUGCUGAGUGGCUUGGUAAGUGUUGUUGGCCC--CCAAA-----ACG----------CAACCUCCAAAACUGGACAAACACCAUUGCU ((((((.((((.(((((((((((...))))))..))))).)))).).))))).--.....-----..(----------(((..((((....)))).........)))). ( -24.90) >DroYak_CAF1 112269 102 + 1 GGCCGUCGCACCUACCACUAUUUGCUGAGUGGUUUGGUAAGUGUUGCUCUCCC--CCAAA-----AAACCCCACUUGCCAACCUCCCUAACAGGACUAAAACCACGGCU ((((((.......((((((........))))))((((((((((..........--.....-----......))))))))))..(((......)))........)))))) ( -26.90) >DroAna_CAF1 96747 83 + 1 GGCCGGCGCACCUAUCACUAUUUGCUGAGCGGUCUGGUAAGUGUUACUGUUCC--ACCACCAGCACAACCUCACCUGCCACCG---------------AA--------- (((.((.(((..((....))..)))((((..(((((((..(((.........)--)).))))).))...)))))).)))....---------------..--------- ( -20.20) >consensus GGCCGUCGCACCUACCACUAUUUGCUGAGUGGUUUGGUAAGUGUUACUGCCCC__CCCAA_____AAACCCAACCAGCAAACAC___________CCGAAACAAAGGCU (((.((.((((.(((((((((((...))))))..))))).)))).)).))).......................................................... (-14.58 = -14.25 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:18 2006