Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,219,537 – 9,219,631 |
Length | 94 |
Max. P | 0.688861 |
Location | 9,219,537 – 9,219,631 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 70.68 |
Mean single sequence MFE | -19.75 |
Consensus MFE | -2.89 |
Energy contribution | -4.41 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.15 |
Mean z-score | -1.76 |
Structure conservation index | 0.15 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9219537 94 + 23771897 UGCACU-----GC-GCCAGGACCACCGUGAA-AAAUAUAAUUCUUUAAAUAGCUCCCACCCACAUUAUAAGAUACAUCUCCGGAGUC--CUGGCAUCCCGACC ......-----..-((((((((..(((.((.-...((((((......................)))))).((....))))))).)))--)))))......... ( -19.65) >DroSec_CAF1 74223 94 + 1 UGCACU-----GU-GCCAGGACCUCCGUGAAUAAAUAUAAUUCUUUAAAUAGCUCCCACCCACUU-UUAAGAUACAUCUCUGGAGUC--CUGGCAUCCAGACC ....((-----((-((((((((.(((..((((.......))))......................-...(((......)))))))))--))))))..)))... ( -24.60) >DroSim_CAF1 74042 94 + 1 UGCACU-----GU-GCCAGGACCUCCGUGAAAAAAUAUAAUUCUUUAAAUAGCUCCCACCCACUU-UUAAGAUACAUCUCUGGAGUC--CUGGCAUCCCGACC ......-----((-((((((((.((((((...............................)))..-...(((......)))))))))--)))))))....... ( -22.68) >DroEre_CAF1 91055 78 + 1 C-----CU----------------CAGUGGA-AAAUAUAAUUCCUUAAAUUGCUACCACGCGCUU-UAAGGAUACAGCUCUGCAGUC--UUGGCAUUCCGUGC .-----..----------------....(((-(........((((((((.(((......))).))-))))))....(((..(....)--..))).)))).... ( -16.90) >DroYak_CAF1 90460 90 + 1 UUCUCCCUUAUGUGGCCAGUGCUGAAGUGAA-AAAUAAAAUUCCUUAAAUAGC----------UC-GAAAGAUACAUCUCUGGAGUCUCUUGGCAUCCCG-AC ..((((...(((((......(((((((.(((-........))))))...))))----------((-....)))))))....))))....((((....)))-). ( -14.90) >consensus UGCACU_____GU_GCCAGGACCUCCGUGAA_AAAUAUAAUUCUUUAAAUAGCUCCCACCCACUU_UUAAGAUACAUCUCUGGAGUC__CUGGCAUCCCGACC ..............(((((.........(((.........)))........(((((.........................)))))...)))))......... ( -2.89 = -4.41 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:18 2006