Locus 3170

Sequence ID 3L_DroMel_CAF1
Location 9,210,360 – 9,210,465
Length 105
Max. P 0.989203
window4945

overview

Window 5

Location 9,210,360 – 9,210,465
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 74.10
Mean single sequence MFE -33.86
Consensus MFE -18.40
Energy contribution -19.63
Covariance contribution 1.23
Combinations/Pair 1.50
Mean z-score -2.43
Structure conservation index 0.54
SVM decision value 2.15
SVM RNA-class probability 0.989203
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9210360 105 - 23771897
CUGUCAUUCACAUGAACUCGAUGUGGUGGGCACCAGGCUCGAGUUUGGAAUCCGUAUUAAACUAUGCCCUCAUCUGGAUUCAGACCUUUGGCACUUUGUAUAACU
.(((((......((((..(((((....(((((((((((....)))))).....((.....))..))))).)))).)..))))......)))))............ ( -27.70)
>DroSec_CAF1 65033 105 - 1
CUGUCAUUCACAUGAACUCGAUGUGGUGGGCUCCAGGCACGAGUUUGGAAUCCGUAGUAAACUACGCUCUCAUCUGGGUUCAGACCUUUGGCACUUUGUACAACU
.(((((......(((((((((((.(((((..(((((((....)))))))..))((((....)))))))..)))).)))))))......)))))............ ( -36.80)
>DroSim_CAF1 64558 105 - 1
CUGUCAUUCACAUGAACUCGAUGUGGUGGGCUCCAGACACGAGUUUGGAAUCCGUAUUAAACUACGCCCUCAUCUGGGUUCAGACCUUUGGCACUUUGUACAACU
.(((((......(((((((((((.(((((..(((((((....)))))))..))(((......))))))..)))).)))))))......)))))............ ( -35.90)
>DroEre_CAF1 81858 105 - 1
CCGUCGUUCACAUGAACUCCAUGUGGUGGGCUCCGGGCCAGAGUCUUGGCUCCGUAUUAAACUACACCCUCAUCUGGGCCCACACAUUCGGCACCCUGUACCACU
..((((..((((((.....))))))((((((.(((((((((....))))).))(((......)))..........)))))))).....))))............. ( -36.80)
>DroYak_CAF1 81142 105 - 1
CCGUUUUUCACAUGAACUCGAUGUGGUGGCCUCGGGGCAAGAGUCUUGGCUCCAUAGUGAACUACACCCUCAUCUGGGCUCACACCUUCGGCACGCUCUACAACU
(((.........(((.(((((((.(((((((....)))..((((....))))..(((....)))))))..)))).))).)))......))).............. ( -26.26)
>DroPer_CAF1 74289 105 - 1
CAACCGUACACGUUAAUGGCAUGUGGUGGCUCCCAGGGGAGUCGCUUUCCGCUGCCAUUAACUUCGUUCUGAUUUUGCUUGUCAAUGUUAUCACCGUGUAUAACU
.....((((((((((((((((.(((((((((((....)))))))....)))))))))))))).......((((...((........)).))))..)))))).... ( -39.70)
>consensus
CUGUCAUUCACAUGAACUCGAUGUGGUGGGCUCCAGGCAAGAGUCUGGAAUCCGUAUUAAACUACGCCCUCAUCUGGGUUCACACCUUUGGCACUUUGUACAACU
..((((......(((((((((((.((.(((.(((((((....))))))).)))(((......)))..)).)))).)))))))......))))............. (-18.40 = -19.63 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:17 2006