Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 928,613 – 928,732 |
Length | 119 |
Max. P | 0.556126 |
Location | 928,613 – 928,732 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.04 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -24.32 |
Energy contribution | -24.43 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.85 |
Structure conservation index | 0.85 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.556126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 928613 119 - 23771897 UCUACUUUAAUAUUCAUUAUUGCCUGGCAGUAAUGCAGACUUACGAUGGGCAUUUUAAGUUUAAGUGCUCGAGACUUUGCUUUCAAAUUGUGUAAGAUUAGGUAUGUGAUCAACAUUAC .............((((...(((((((((....)))...((((((..((((((((.......))))))))((((......))))......))))))..)))))).)))).......... ( -28.60) >DroSec_CAF1 62588 118 - 1 UCUACUUUAAUAUUCAUUAUUGCCUGACAGUGAUGCAGACUUACCAUGGGCAUUUUAAGUUUAAGUGCUCGAGACUUUGCUUUCAAAUUGUGUAAGAUUAGGU-UGUGAUACAUAUUAG .......((((((..(((((.((((((((....))....(((((((.((((((((.......))))))))((((......))))....)).))))).))))))-.)))))..)))))). ( -27.50) >DroSim_CAF1 55579 119 - 1 UCUCCUUUAAUAUUCAUUAUUGCCUUACAAUAAUGCAGACUUACGAUGGGCAUUUUAAGUUUAAGUGCUCGAGAAUUUGCCUUCAAAUUGUGUAAGGUAAGGCAUGUGAUCCAUAUUAG .......((((((((((...((((((((...........(((((..(((((((((.......)))))))))(.((((((....)))))).)))))))))))))).))))...)))))). ( -29.80) >consensus UCUACUUUAAUAUUCAUUAUUGCCUGACAGUAAUGCAGACUUACGAUGGGCAUUUUAAGUUUAAGUGCUCGAGACUUUGCUUUCAAAUUGUGUAAGAUUAGGUAUGUGAUCCAUAUUAG .......((((((((((...(((((((((....))....(((((...((((((((.......))))))))((((......)))).......))))).))))))).))))...)))))). (-24.32 = -24.43 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:06 2006