Locus 317

Sequence ID 3L_DroMel_CAF1
Location 928,613 – 928,732
Length 119
Max. P 0.556126
window475

overview

Window 5

Location 928,613 – 928,732
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 91.04
Mean single sequence MFE -28.63
Consensus MFE -24.32
Energy contribution -24.43
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.85
SVM decision value 0.04
SVM RNA-class probability 0.556126
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 928613 119 - 23771897
UCUACUUUAAUAUUCAUUAUUGCCUGGCAGUAAUGCAGACUUACGAUGGGCAUUUUAAGUUUAAGUGCUCGAGACUUUGCUUUCAAAUUGUGUAAGAUUAGGUAUGUGAUCAACAUUAC
.............((((...(((((((((....)))...((((((..((((((((.......))))))))((((......))))......))))))..)))))).)))).......... ( -28.60)
>DroSec_CAF1 62588 118 - 1
UCUACUUUAAUAUUCAUUAUUGCCUGACAGUGAUGCAGACUUACCAUGGGCAUUUUAAGUUUAAGUGCUCGAGACUUUGCUUUCAAAUUGUGUAAGAUUAGGU-UGUGAUACAUAUUAG
.......((((((..(((((.((((((((....))....(((((((.((((((((.......))))))))((((......))))....)).))))).))))))-.)))))..)))))). ( -27.50)
>DroSim_CAF1 55579 119 - 1
UCUCCUUUAAUAUUCAUUAUUGCCUUACAAUAAUGCAGACUUACGAUGGGCAUUUUAAGUUUAAGUGCUCGAGAAUUUGCCUUCAAAUUGUGUAAGGUAAGGCAUGUGAUCCAUAUUAG
.......((((((((((...((((((((...........(((((..(((((((((.......)))))))))(.((((((....)))))).)))))))))))))).))))...)))))). ( -29.80)
>consensus
UCUACUUUAAUAUUCAUUAUUGCCUGACAGUAAUGCAGACUUACGAUGGGCAUUUUAAGUUUAAGUGCUCGAGACUUUGCUUUCAAAUUGUGUAAGAUUAGGUAUGUGAUCCAUAUUAG
.......((((((((((...(((((((((....))....(((((...((((((((.......))))))))((((......)))).......))))).))))))).))))...)))))). (-24.32 = -24.43 +   0.12) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:06 2006