| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,209,791 – 9,209,904 |
| Length | 113 |
| Max. P | 0.685131 |
| Location | 9,209,791 – 9,209,904 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -34.96 |
| Consensus MFE | -19.82 |
| Energy contribution | -20.35 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9209791 113 - 23771897 ACCAGACUGAAAUCGAGAACUGGAUUGUGAAGAAGGCGGCUUUUCGUCGCAAUGCAUAUCCUCGAAAAGGGAUAAAGCCUUUUGUUUAUCCUUACAAUCUGGGCUGGAAGACA .(((((.((...(((((...((.(((((((.(((((....))))).))))))).))....)))))..(((((((((........))))))))).)).)))))........... ( -34.70) >DroSec_CAF1 64464 113 - 1 AUCAGACUGAAAUCGAGAACUGGAUUGUGAAGAAGGCUGCUUUUCGGCGCAAUGCAUAUCCUCAAAAAAGGAUAAAGGCUUUCGUUUAUCCCUACAAUUUGGGCUGGAAGGCA ......((..((((.(....).))))....))......((((((((((.(((.((.((((((......))))))...))....((........))...))).)))))))))). ( -28.00) >DroSim_CAF1 63989 113 - 1 ACCAGACUGAAAUCGACCUCUGGAUUGUUAAGAAGGCGGCUUUUCGUCGCAAUGCAUAUCCUCAAAAAAGGAUAAAGGAUUUCGUUUAUCCCUACAAUCUGGGCUGGAAGGCA .(((((.((............(((((((.......(((((.....)))))...))).))))........(((((((.(....).)))))))...)).)))))(((....))). ( -31.80) >DroEre_CAF1 81289 113 - 1 ACCAGACUGAAAUCGAGAGCUGGAUUGUGAGGAAGGCGGUUUUUCGUCGCACUGCAUAUCCUGGAAACAGGAUAAAGGCCUUCGUUUUUCCCUACAAUCUGGGCUGGAGGGCA .((((........(....)(..(((((((.(((((((((....)))))((.((...(((((((....))))))).))))........)))).)))))))..).))))...... ( -42.20) >DroYak_CAF1 80573 113 - 1 AUCAGACUGGAAUCGAGAGCUGGAUUGUGAGGAAGGCGCUGUUUCGUCGCAAUGCAUAUCCUGGAAACAGGAUAAGGGCUUUCGUUUUUCCCUACAAUCUGGGCUGGAAGGCA .(((((..((((.(((((((((.(((((((.((((......)))).))))))).).(((((((....)))))))..))))))))...))))......)))))(((....))). ( -46.60) >DroAna_CAF1 66801 113 - 1 AUCGCACCGAUAUCGAAACAUGGAUUCUGAAGAAGGCAAGAUAUCGCCGCGAUAAGGACAUUCAGAACUGCAUCGAACCCUUUGAUUAUCCUUACAACCUUGGUUGGAAAGCC .((((..(((((((......((..(((....)))..)).)))))))..))))((((((...(((((..............)))))...))))))((((....))))....... ( -26.44) >consensus ACCAGACUGAAAUCGAGAACUGGAUUGUGAAGAAGGCGGCUUUUCGUCGCAAUGCAUAUCCUCAAAAAAGGAUAAAGGCUUUCGUUUAUCCCUACAAUCUGGGCUGGAAGGCA .((((........((((...((.(((((((.((((......)))).))))))).))((((((......))))))......)))).....(((........)))))))...... (-19.82 = -20.35 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:16 2006