Locus 3167

Sequence ID 3L_DroMel_CAF1
Location 9,204,141 – 9,204,239
Length 98
Max. P 0.635258
window4941

overview

Window 1

Location 9,204,141 – 9,204,239
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 83.42
Mean single sequence MFE -17.47
Consensus MFE -11.59
Energy contribution -11.62
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -2.32
Structure conservation index 0.66
SVM decision value 0.21
SVM RNA-class probability 0.635258
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9204141 98 + 23771897
ACUUGAAAAUUCAAAAGUUCUGCAGGAAAUGAAAGUUGGCGCAAUCGUGCAGAAAAGUUCAGAGUGAGC-AAAACAAAGUGGAAA-AAAUAUUAU--AAAAA
.........((((....(((((((.((..((...(....).)).)).)))))))..((((.....))))-.........))))..-.........--..... ( -16.20)
>DroPse_CAF1 68135 87 + 1
ACUUGAAAAUUCAAAAGUUCUGCAGGAAAUGAAAGUUUGCGCAAUCGUGCAGAAAAGUUCCGAGUGGAG-GAA-------GGAAAAAAAU-------AAGGA
.((((....(((.....(((..(.((((.......(((((((....)))))))....))))..)..)))-...-------.))).....)-------))).. ( -19.20)
>DroSec_CAF1 57933 96 + 1
ACUUGAAAAUUCAAAAGUUCUGCAGGAAAUGAAAGUUGGCGCAAUCGUGCAGAAAAGUUCAGAGUG-GC-AAAACAAAGCAGAAAAAAAUAUU----GAAAA
.........(((((...((((((......((((..((.((((....))))...))..))))..((.-..-...))...)))))).......))----))).. ( -19.00)
>DroEre_CAF1 75665 97 + 1
ACUUGAAAAUUCAAAAGUUCUGCAGGAAAUAAAAGUUGGCGCAAUCGUGCAGAAAAGUUCAGAGUGGGC-AAAACAAAGCAGCAAAAAAUAUU----AAAAA
..(((...((((.....(((((((.((.................)).))))))).......))))...)-)).....................----..... ( -13.63)
>DroAna_CAF1 59868 102 + 1
ACUUGAAAAUUCAAAAGUUCUGCGGGAAAUGAAAGUUGGCGCAAUCGUGCAGAAAAGUUCAGAGUGGAAAAAAACAAAGCAACAAAAAGCAGUCUGGGGGAA
..((((....))))...((((.(.(((..((((..((.((((....))))...))..)))).................((........))..))).).)))) ( -17.80)
>DroPer_CAF1 67715 87 + 1
ACUUGAAAAUUCAAAAGUUCUGCAGGAAAUGAAAGUUUGCGCAAUCGUGCAGAAAAGUUCCGAGUGGAG-GAA-------GGAAAAAAAU-------AAGAA
.((((....(((.....(((..(.((((.......(((((((....)))))))....))))..)..)))-...-------.))).....)-------))).. ( -19.00)
>consensus
ACUUGAAAAUUCAAAAGUUCUGCAGGAAAUGAAAGUUGGCGCAAUCGUGCAGAAAAGUUCAGAGUGGAC_AAAACAAAGCAGAAAAAAAUAUU____AAAAA
(((((((..........(((((((.((..((...(....).)).)).)))))))...))).))))..................................... (-11.59 = -11.62 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:13 2006