Locus 3165

Sequence ID 3L_DroMel_CAF1
Location 9,201,161 – 9,201,252
Length 91
Max. P 0.691531
window4939

overview

Window 9

Location 9,201,161 – 9,201,252
Length 91
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 75.42
Mean single sequence MFE -29.58
Consensus MFE -14.47
Energy contribution -15.47
Covariance contribution 1.00
Combinations/Pair 1.14
Mean z-score -2.18
Structure conservation index 0.49
SVM decision value 0.33
SVM RNA-class probability 0.691531
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9201161 91 + 23771897
AACAUGGUGGCAGCAGCACUACCACCUCAUUC-GCUCCUCAACCCCCCCCCCCCCACCAUUGCCAACUGGCCAGUCAAAGGUGGGCGUGGC----U
.....(((((.((.....)).)))))......-................(((((((((((((((....)).))))....)))))).).)).----. ( -24.90)
>DroSec_CAF1 55078 83 + 1
AACAUGGUGCCAGCAGCACUACCACCUCAUAC-GC------------CCCGCCCACCCAUGGCCAAGUGGCCAGUCAAAGGUGUGCGUGGCUGGCU
....((((((.....))))))...........-((------------(.(((.((((..(((((....)))))......)))).))).)))..... ( -31.50)
>DroSim_CAF1 55608 84 + 1
AACAUGGUGCCAGCAGCACUACCACCUCAUACCAC------------CUCGCCCACCCAUUGCCAACUGGCCAGUCAAAGGUGGGCGUGGCUGGCU
....((((((.....))))))..........((((------------(.((((((((.((((((....)).))))....)))))))).)).))).. ( -34.00)
>DroEre_CAF1 72748 74 + 1
AACAUGGUGCCAGCAGCUUCUCCAUCUCCUGC-G-----------------CGCCUCCAUGGCCAACUGGCCAGUCAAAGGUGGGCGUGGA----C
...((((.((.....))....)))).((((((-.-----------------(((((...(((((....))))).....))))).))).)))----. ( -27.90)
>consensus
AACAUGGUGCCAGCAGCACUACCACCUCAUAC_GC____________CCCGCCCACCCAUGGCCAACUGGCCAGUCAAAGGUGGGCGUGGC____U
..((((((((.....))))..((((((...((...........................(((((....)))))))...)))))).))))....... (-14.47 = -15.47 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:11 2006