Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,194,599 – 9,194,708 |
Length | 109 |
Max. P | 0.591527 |
Location | 9,194,599 – 9,194,708 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 89.18 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -23.60 |
Energy contribution | -25.04 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.61 |
Structure conservation index | 0.75 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9194599 109 + 23771897 AGCUGCUAAAUGGUGCAGAAAGUUCACAGGGUU------AGCCCUGGCUAUUCCUUGGUGCCAACUUCUACAUUU-UUGUAUGGCAUGCAUUAAACUACUCUCGUGGCAACACGGC .(((((((..(((..(.((....)).(((((.(------(((....))))..))))))..))).....((((...-.))))))))).))............(((((....))))). ( -36.10) >DroSec_CAF1 48629 110 + 1 AGCUGCUAAAUGGCUCAGAAAGUUCACAGGAUU------AGUCCUGGCUAUUCUUCGGUCCCAACUUCUACAUUUUUUGUACGGCAUGCAUUAAACUUCUCUCGUGGCAAAACGGC .((((((....((((.(((((((...(((((..------..)))))))).))))..))))........((((.....)))).)))).))............((((......)))). ( -22.30) >DroSim_CAF1 49119 109 + 1 AGCUGCUAAAUGGCCCAGAAAGUUCACAGGGUU------AGCCCUGGCUAUUAUUCGGUGCCAACUUCUACAUUU-UUGUACGGCAUGCAUUAAACUUCUCUCGUGGCAACACGGC .((((((...((((((.((((((...(((((..------..)))))...))).))))).)))).....((((...-.)))).)))).))............(((((....))))). ( -35.60) >DroEre_CAF1 66091 115 + 1 AGCUGCUAAAUGGCCCAGAAAGUUCACAGGGUUAUUCCUAGCCCUGGCUAUUCCUCGGUGCCAGCUUCUACAUUU-UUUUAUGGCCUGCAUUAAACUCUUUUCGUGGCAACACGGC .((.((....((((((.((.(((...((((((((....))))))))...)))..)))).)))).......(((..-....)))))..))............(((((....))))). ( -33.10) >DroYak_CAF1 65145 109 + 1 AGCUGCUAAAUGGACCAGAAAGUUCACAGGGUU------AGCGCCGGCUAUUCUUCGGGGCCAACUUCUACAUUU-UUUUAUGGCAUGCAUUAAACUUCUUUCGUGGCAACACGGC .(((((((..(((((......)))))..(((((------.((.((((.......)))).)).)))))........-.....))))).))............(((((....))))). ( -30.00) >consensus AGCUGCUAAAUGGCCCAGAAAGUUCACAGGGUU______AGCCCUGGCUAUUCUUCGGUGCCAACUUCUACAUUU_UUGUAUGGCAUGCAUUAAACUUCUCUCGUGGCAACACGGC .((((((...((((.(.((((((...(((((((......)))))))...))).))).).)))).....((((.....)))).)))).))............(((((....))))). (-23.60 = -25.04 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:04 2006