Locus 3159

Sequence ID 3L_DroMel_CAF1
Location 9,192,435 – 9,192,538
Length 103
Max. P 0.994050
window4929

overview

Window 9

Location 9,192,435 – 9,192,538
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.04
Mean single sequence MFE -24.94
Consensus MFE -21.96
Energy contribution -23.32
Covariance contribution 1.36
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.88
SVM decision value 2.45
SVM RNA-class probability 0.994050
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9192435 103 + 23771897
GUAGUCUUCUCAGUGUGGGUUUAUUUUUAAGAAUGCUGUUUACGGCACAUGAAAGUGAAAAAUCAACAAUAUUAGUGAACGACGCAUGCUUGAGGAAAACUGA
((..(((((...(((((.(((((((..((....(((((....)))))(((....)))............))..)))))))..)))))....)))))..))... ( -26.20)
>DroSec_CAF1 47072 103 + 1
GUAGUCUUCUCAGUGUGAGCUUAUUUUUAAGAAUGCUGUUUACGGCACACGAAAGUGAAAAAUCAACAAUAUUAGUGAACGACGCAUGCUAGAGGAAAACUGA
((..((((((.((((((.(.(((((..((....(((((....)))))(((....)))............))..))))).)....))))))))))))..))... ( -26.50)
>DroSim_CAF1 47496 103 + 1
GUAGUCUUCUCAGUGUGAGCUUAUUUUUAAGAAUGCUGUUUACGGCACACGAAAGUGAAAAAUCAACAAUAUUAGUGAACGACGCAUGCUUGAGGAAAACUGA
.((((.(((((((((((.(.(((((..((....(((((....)))))(((....)))............))..))))).)....))))).))))))..)))). ( -25.10)
>DroEre_CAF1 62501 102 + 1
GUAAUCCUCUCAAUAUGCGUUUAUU-UUAAGAAUGCUGUUUACAGCACACGUAAGUGAAAAAUCAACAAUAUUAUUGAACGACACAUGCUUGAGGAAAACUGA
....(((((...((.((((((((..-.......(((((....)))))(((....)))..................)))))).)).))....)))))....... ( -24.60)
>DroYak_CAF1 63462 103 + 1
GUAGUCCUCUCAGUUUGAGUUUAUUUUUAAGAAUGCUGUUUACGGCCCAUGAAAGUGCAAAUUCAACAAUAUUAGUGAACGACACAUGCUUGAGGAAAACUAA
((..(((((..((((((((((((((((((.(...((((....)))).).))))))))..)))))))........(((.....)))..))).)))))..))... ( -22.30)
>consensus
GUAGUCUUCUCAGUGUGAGUUUAUUUUUAAGAAUGCUGUUUACGGCACACGAAAGUGAAAAAUCAACAAUAUUAGUGAACGACGCAUGCUUGAGGAAAACUGA
((..(((((...(((((.(((((((..((....(((((....)))))(((....)))............))..)))))))..)))))....)))))..))... (-21.96 = -23.32 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:01 2006