Locus 3156

Sequence ID 3L_DroMel_CAF1
Location 9,184,606 – 9,184,702
Length 96
Max. P 0.888320
window4924

overview

Window 4

Location 9,184,606 – 9,184,702
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 88.19
Mean single sequence MFE -29.36
Consensus MFE -24.50
Energy contribution -23.23
Covariance contribution -1.27
Combinations/Pair 1.31
Mean z-score -2.42
Structure conservation index 0.83
SVM decision value 0.95
SVM RNA-class probability 0.888320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9184606 96 - 23771897
GCACCUAAUGAGAGUAGGAGUUAGCUAAGUCAAUGACCCAAAACCACUGUGACACCACUCAGUGGUUUUGAUAAACGCAUCACCCGACUAGGCUUA
((.((((.(....))))).)).((((.((((........((((((((((.(......).))))))))))(((......)))....)))).)))).. ( -26.80)
>DroSec_CAF1 39418 96 - 1
GCACCUAAUGAGACUAGGAGUUAGCUAAGACAAUGACCCAAAACCACUGUGACACCACUCAGUGGUUUUGAUAAACGCACCGCCCGACUAGGCUUA
((.((((.......)))).(((......))).......(((((((((((.(......).)))))))))))......))...(((......)))... ( -25.50)
>DroSim_CAF1 39640 96 - 1
GCACCUAAUGAGACUAGGAGUUAGCUAAGUCAAUGACCCAAAACCACUGUGACACCACUCAGUGGUUUUGAUAAACGCACCGCCCGACUAGGCUUA
((.((((.......)))).)).((((.((((.......(((((((((((.(......).)))))))))))......((...))..)))).)))).. ( -27.80)
>DroEre_CAF1 54400 96 - 1
GCACCUAAUGAGAGUAGGAGUUAGGUAAGUCAAUGACCCAAAACCACUGUGACACCACUCAGUGGUUUUGAUAAACGCACCGCCCGACUAGGCUUA
((.((((.(....)))))(((..(((..(((...))).(((((((((((.(......).)))))))))))...........)))..)))..))... ( -28.90)
>DroYak_CAF1 54679 96 - 1
GCACCUAAUGAGAGCAGGAGUUAGGUAAGUCAAUGACCCAAAACCACUGUGACACCACUCAGUGGUUUUGAUAAACGCACCGCCCGACUGGGCUUA
(((((((((..........)))))))............(((((((((((.(......).)))))))))))......))...((((....))))... ( -31.70)
>DroAna_CAF1 41273 96 - 1
GUCCCCAAUAUUAGUGGGAGUUGGCCAAGUCAUUGGCCUAAAACCACCACCGCACGGCUUGGUGGUUUUGAUAACCGCAUUACCCGACUGGGCCUA
((((.......(((((.(.(((((((((....))))))(((((((((((((....))..)))))))))))..)))).))))).......))))... ( -35.44)
>consensus
GCACCUAAUGAGAGUAGGAGUUAGCUAAGUCAAUGACCCAAAACCACUGUGACACCACUCAGUGGUUUUGAUAAACGCACCGCCCGACUAGGCUUA
...((((.......))))....((((.((((.......(((((((((((((....))..)))))))))))......(.....)..)))).)))).. (-24.50 = -23.23 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:57 2006