Locus 3151

Sequence ID 3L_DroMel_CAF1
Location 9,165,505 – 9,165,600
Length 95
Max. P 0.500000
window4914

overview

Window 4

Location 9,165,505 – 9,165,600
Length 95
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 69.91
Mean single sequence MFE -24.15
Consensus MFE -6.38
Energy contribution -8.06
Covariance contribution 1.68
Combinations/Pair 1.17
Mean z-score -1.70
Structure conservation index 0.26
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9165505 95 - 23771897
GCGUGAUGAUGAUGGUGGUGCACCAGCAGAAAAAACGUGCUGUAAAUAAC-------CACCUUGAGUCGAGCCAAAACUAUGAUAAGUUUUUUAAGUCACGG
.(((((((((...((((((....((((((......).)))))......))-------))))....))).....((((((......))))))....)))))). ( -27.50)
>DroSec_CAF1 20538 78 - 1
GCGUGAUGAUGAUGGUGCUGCACCAGCAGAAAAACCGUGAU------------------------GUCGAUCCAAAACUAUGAUCAGGUUUUUAGGUCACGG
.((((((.((.(((((.((((....))))....))))).))------------------------...((((.........))))..........)))))). ( -22.40)
>DroSim_CAF1 20709 95 - 1
GCGUGAUGAUGAUGGUGCUGCACCAGCAAAAAAACCGUGCUGCAAAUAAC-------CACUUUGAGUCGAUCCAAAACUAUGAUCAGGUUUUUAGGUCACGG
.((((((..((.(((((...))))).)).(((((((..(((.((((....-------...))))))).((((.........)))).)))))))..)))))). ( -24.10)
>DroEre_CAF1 33202 81 - 1
GCGUGGUGAUGAUGAUGGUGCACCUGCAGAAAAAUCAU-------------------CAUUUUGAUUCGAUCAAAAACUAUGAUCAGGUCUUU--GUCACGU
((((((..((((((((..(((....))).....)))))-------------------))....(((..(((((.......)))))..))).).--.)))))) ( -25.50)
>DroYak_CAF1 34692 90 - 1
GCGUGGUGAUGAUGAUGGUGCACCAGCAGAAAAACCAUCCUGUGAACAGUCAUUUGUCAUUUGGAUUUGAUCUAAAUCUAUGAUAACGUU------------
((((...(((((.((((((..............))))))(((....))))))))((((((..(((((((...))))))))))))))))).------------ ( -21.24)
>consensus
GCGUGAUGAUGAUGGUGGUGCACCAGCAGAAAAACCGUGCUG__AA_A_________CACUUUGAGUCGAUCCAAAACUAUGAUCAGGUUUUUA_GUCACGG
.((((((....(((((..(((....))).....)))))..............................((((.........))))..........)))))). ( -6.38 =  -8.06 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:48 2006