Locus 3150

Sequence ID 3L_DroMel_CAF1
Location 9,165,184 – 9,165,279
Length 95
Max. P 0.817648
window4913

overview

Window 3

Location 9,165,184 – 9,165,279
Length 95
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 95.51
Mean single sequence MFE -30.36
Consensus MFE -27.24
Energy contribution -26.96
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.67
SVM RNA-class probability 0.817648
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9165184 95 + 23771897
CC---UUCUAGUCCCUUUUCCUACGGCUGGUGUUGGUCCUGGGUCCUUUGUGUUUGCCUUGCCUCACUUCAGGGUGCCUACACGGAGGAAAACUAUCU
..---.(((((..((....((.......))....))..)))))((((((((((.(((((((........)))))))...))))))))))......... ( -29.60)
>DroSec_CAF1 20274 98 + 1
CCUGCUUCUAGUCCGUUGUCCUACGGCUGGUGUUGGUCCUGGGUCCUUUGUGUUUGCCUUGCCUCACUUCAGGGUGCCUACACGGAGGAAAACUAUCU
((.((..((((.((((......)))))))).)).))...(((.((((((((((.(((((((........)))))))...))))))))))...)))... ( -33.60)
>DroSim_CAF1 20431 98 + 1
CCUGCUUCUAGUCCCUUGUCCUACGGCUGGUGUUGGUCCUGGGUCCUUUGUGUUUGCCUUGCCUCACUUCAGGGUGCCUACACGGAGCAAAACUAUCU
..((((((..(.(((..(.((.(((.....))).)).)..))).)....((((.(((((((........)))))))...))))))))))......... ( -26.70)
>DroEre_CAF1 32933 98 + 1
CCUGCUCCUAGUCCCUUGUCCUACGGCUGGUGUUGGUCCUGGGUCCUUUGUGUUUGCCUUGCCUCACUUCAGGGUGCCUACACGGAGGAAAACUAUCU
......(((((..((....((.......))....))..)))))((((((((((.(((((((........)))))))...))))))))))......... ( -31.80)
>DroYak_CAF1 34431 98 + 1
CCUGCUUCUAGUCCCUUGUCCCACGGCUGGUGUUGGUCCUGGGUCUUUUGUGUUUGCCUUGCCUCACUUCGGGGUGCCUACACGGAGGAAAACUAACU
........((((.......((((.((((......)))).))))((((((((((..((...(((((.....)))))))..))))))))))..))))... ( -30.10)
>consensus
CCUGCUUCUAGUCCCUUGUCCUACGGCUGGUGUUGGUCCUGGGUCCUUUGUGUUUGCCUUGCCUCACUUCAGGGUGCCUACACGGAGGAAAACUAUCU
........((((.......((((.((((......)))).))))((((((((((.(((((((........)))))))...))))))))))..))))... (-27.24 = -26.96 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:47 2006