Locus 315

Sequence ID 3L_DroMel_CAF1
Location 924,602 – 924,701
Length 99
Max. P 0.703061
window472

overview

Window 2

Location 924,602 – 924,701
Length 99
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 86.22
Mean single sequence MFE -22.70
Consensus MFE -17.85
Energy contribution -17.97
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.79
SVM decision value 0.36
SVM RNA-class probability 0.703061
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 924602 99 - 23771897
------UUCUGAGUGCAACCUCUUUUGUUGCAUCUUUAUCUGCGACGUUUUGUUUCUAAGUAUUUGAAGUAUAGGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC
------...((((((((((((.....((((((........))))))......((((.........))))...))))).((....)))))))))............ ( -19.60)
>DroSec_CAF1 58687 102 - 1
UAAAAAUUCUGAAUGCAACCUG---CAUUGCAUCUAAACCUGCGACGUUUUGUUUCUAAAUAUUUCAAGUAAAUGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC
.....(((..(((.((((...(---(.(((((........))))).)).)))))))..))).(((((..(((((((..((....)))))))))..)))))..... ( -21.60)
>DroSim_CAF1 51578 102 - 1
UAAAAAUUCUGAAUGCAACCUG---CAUUGCAUCUAAACCUGCGACGUUUUGUUUCUAAAUAUUUCAGGUAGAUGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC
.....(((..(((.((((...(---(.(((((........))))).)).)))))))..))).((((((((((((((..((....))))))))))))))))..... ( -26.90)
>consensus
UAAAAAUUCUGAAUGCAACCUG___CAUUGCAUCUAAACCUGCGACGUUUUGUUUCUAAAUAUUUCAAGUAAAUGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC
.........((((((((..........(((((........))))).......(((((((((((((.....)))))))))))))..))))))))............ (-17.85 = -17.97 +   0.12) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:03 2006