Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,155,425 – 9,155,518 |
Length | 93 |
Max. P | 0.996076 |
Location | 9,155,425 – 9,155,518 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -16.60 |
Consensus MFE | -16.40 |
Energy contribution | -16.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.10 |
Structure conservation index | 0.99 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9155425 93 + 23771897 CUAACACCCACCAAUACACUCCCA-UACUAACGCACACAUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU ........................-.............................(((((.(((((((((......))).)))))).)))))... ( -16.40) >DroSim_CAF1 10649 93 + 1 CUUACACCCACCAAUACACUCACU-UACUAACACACACAUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU ........................-.............................(((((.(((((((((......))).)))))).)))))... ( -16.40) >DroEre_CAF1 22779 91 + 1 CUUACACCCACCAAUCCACUCACUA---ACACACACACGUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU .........................---........((((.........)))).(((((.(((((((((......))).)))))).)))))... ( -17.00) >consensus CUUACACCCACCAAUACACUCACU_UACUAACACACACAUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU ......................................................(((((.(((((((((......))).)))))).)))))... (-16.40 = -16.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:44 2006