Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,150,621 – 9,150,718 |
Length | 97 |
Max. P | 0.651827 |
Location | 9,150,621 – 9,150,718 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -15.99 |
Energy contribution | -17.93 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.10 |
Mean z-score | -2.31 |
Structure conservation index | 0.61 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9150621 97 - 23771897 ----CGAUUGUUUUUU-GUUUUGUGGCGCCCAACGUGGGGCUCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUU---- ----.((.(((.((((-((.((((((.((((......)))))))))).....(((((...((((((.....)))))).))))))))))).))).))......---- ( -25.60) >DroPse_CAF1 6083 101 - 1 UUUGUGUGUGUAUUUG-AGGUGUUUGCGACCCCCACAGGAGCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGCUCAAAACU---- ((((.((((((.((((-.(((.((((.(.....).)))).))).........(((((...((((((.....)))))).))))).)))))))))).))))...---- ( -21.90) >DroSec_CAF1 5810 97 - 1 ----CGAUUGUUUUUU-GUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUCCAAAUCAUUUUACUGCAAAAUGCGUUCGAAUUU---- ----(((.(((.((((-((.((((((.((((......)))))))))).....(((((...((((((.....)))))).))))))))))).))).))).....---- ( -30.10) >DroEre_CAF1 17882 102 - 1 ----CGAGUGUUUUUUCGUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUUGUUG ----.((((((.((((((..((((((.((((......))))))))))..)..(((((...((((((.....)))))).)))))).)))).)))))).......... ( -27.20) >DroYak_CAF1 19070 101 - 1 ----CGAGUGUUUUUU-GUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUUCUUC ----.((((((.((((-((.((((((.((((......)))))))))).....(((((...((((((.....)))))).))))))))))).)))))).......... ( -29.60) >DroPer_CAF1 6075 101 - 1 UUUGUGUGUGUAUUUG-AGGUGUUUGCGACCCCCACAGGAGCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGCUCAAAACU---- ((((.((((((.((((-.(((.((((.(.....).)))).))).........(((((...((((((.....)))))).))))).)))))))))).))))...---- ( -21.90) >consensus ____CGAGUGUUUUUU_GUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUU____ .....((((((.(((.....((((((.((((......)))))))))).....(((((...((((((.....)))))).)))))...))).)))))).......... (-15.99 = -17.93 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:41 2006