Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,148,422 – 9,148,517 |
Length | 95 |
Max. P | 0.512043 |
Location | 9,148,422 – 9,148,517 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.52 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -14.35 |
Energy contribution | -15.35 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.66 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9148422 95 + 23771897 UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCACUGGUCACUUAGCGCUCAAGCUGCUUUUAUCUGUUCAAAUUUGCGAAUGAUAUAA---------------------GGUUGAAUC ........(((((((((((((.((....)).)))))))..))))))((((.((.....((((.((((........))))))))..)---------------------).))))... ( -22.50) >DroSec_CAF1 3512 95 + 1 UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCUCUAGUCACUUAGCGCUCAAGCUGCUUUUAACUGUUCAAAUUUUCGAAUGAUAUAA---------------------GGUUGAACC .(((((((((((((((((.(((((....))))).))))..((((......))))....)))).((((........)))).))))))---------------------)))...... ( -17.90) >DroSim_CAF1 3527 116 + 1 UAUUUUAUGUGUUACGAUCAGAGGUAUUUCUCUAGUCACUUAGCGCUCAAGCUGGUUUUAACUGUUCAAAUUUGCGAAUGAUAUAUUCGAUAUAUAUAUGAUAUUAACUUUUAGCU ........((((((.(((.(((((....))))).)))...))))))...((((((..((((....(((.((...((((((...))))))......)).)))..))))...)))))) ( -19.80) >DroEre_CAF1 15467 94 + 1 UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCUCUGGUCACUUAGCGCUCA-AGCCGUUUUAUCUGCUCAAAUUUGCAAAUGUUAUGA---------------------GUUUUAACA ........((((((((((((((((....))))))))))..))))))..(-((((((..(((.(((........))).)))..))).---------------------))))..... ( -26.50) >consensus UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCUCUAGUCACUUAGCGCUCAAGCUGCUUUUAACUGUUCAAAUUUGCGAAUGAUAUAA_____________________GGUUGAACC ........((((((((((((((((....))))))))))..))))))...................................................................... (-14.35 = -15.35 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:40 2006