Locus 3144

Sequence ID 3L_DroMel_CAF1
Location 9,147,697 – 9,147,797
Length 100
Max. P 0.861512
window4905

overview

Window 5

Location 9,147,697 – 9,147,797
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 95.53
Mean single sequence MFE -26.20
Consensus MFE -25.88
Energy contribution -25.30
Covariance contribution -0.58
Combinations/Pair 1.12
Mean z-score -0.88
Structure conservation index 0.99
SVM decision value 0.83
SVM RNA-class probability 0.861512
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9147697 100 - 23771897
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAACGAC-----AGCGACAGCGAGAACGACAAC
..((((......(((....(((((((.....))).))))...(((..(((.((((((.....)))))))))...)))..-----.)))....))))......... ( -26.30)
>DroPse_CAF1 2866 105 - 1
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAACGACAACACAGCGGCAGUGGGAACGACAAC
.............((....))((((..(((.(((.(.((...(((..(((.((((((.....)))))))))...)))...)).).)))....)))..))).)... ( -26.80)
>DroSim_CAF1 2813 100 - 1
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAAUGAC-----AGCGACAGCGAGAACGACAAC
..((((......(((...(((((((.....)))).(((....)))....)))(((((.....)))))............-----.)))....))))......... ( -24.70)
>DroYak_CAF1 15933 100 - 1
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAACGAC-----AGCGACAGCGAGAACGACAAC
..((((......(((....(((((((.....))).))))...(((..(((.((((((.....)))))))))...)))..-----.)))....))))......... ( -26.30)
>DroAna_CAF1 2905 100 - 1
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAACGAC-----AGCGACAGCGAGAACGACAAC
..((((......(((....(((((((.....))).))))...(((..(((.((((((.....)))))))))...)))..-----.)))....))))......... ( -26.30)
>DroPer_CAF1 2854 105 - 1
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAACGACAACACAGCGGCAGUGGGAACGACAAC
.............((....))((((..(((.(((.(.((...(((..(((.((((((.....)))))))))...)))...)).).)))....)))..))).)... ( -26.80)
>consensus
CACUUGAAUUUAUGCAAUGGCGCGUGUCCAACGCAGCGUAUACGUAAUGGCUGGCACUCAAAGUGCCACUAAAAACGAC_____AGCGACAGCGAGAACGACAAC
..((((......(((....(((((((.....))).))))...(((..(((.((((((.....)))))))))...)))........)))....))))......... (-25.88 = -25.30 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:39 2006