Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,146,044 – 9,146,149 |
Length | 105 |
Max. P | 0.604289 |
Location | 9,146,044 – 9,146,149 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -22.84 |
Consensus MFE | -20.96 |
Energy contribution | -20.74 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.15 |
Mean z-score | -1.09 |
Structure conservation index | 0.92 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9146044 105 - 23771897 GAGAGAAUGUGGGCCACGGCACGCCCAGACUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCGCAUCAAAUCAGCAAAUCAGCCACA ((....((((((((((.((....))......(((((......))))))))))...((((((.....)))))).......)))))....)).((......)).... ( -18.90) >DroSec_CAF1 1125 105 - 1 GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCGCAUCAAAUCAGCAAAUCAGCCACA (((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). ( -23.21) >DroSim_CAF1 1132 105 - 1 GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCGCAUCAAAUCAGCAAAUCAGCCACA (((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). ( -23.21) >DroEre_CAF1 13021 105 - 1 GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCACAUCAAAUCAGCAAAUCAGCCGCA (((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). ( -22.81) >DroYak_CAF1 14156 105 - 1 GAGAGAGUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGCCCAACUUUUGUGAGCUGCAAAAUUAAAAUCACAUCAAAUCAGCAAAUCAGCCACA ..((((((.(((((........)))))(((.(((((......))))).)))..))))))(((.((((..............................))))))). ( -23.71) >DroAna_CAF1 1226 96 - 1 AAGAGAGUAUGGGUCGUGGCACGCCCAGGCUUGAUUACAAA-AAUUAUAGCCGACUUUUGUGGGCUGCAAAAUUAAAAUCAUAUCAAA--------UCAGCCACA ..((((((.((((.((.....))))))(((((((((.....-))))).)))).))))))((((.(((......((......)).....--------.))))))). ( -25.20) >consensus GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCACAUCAAAUCAGCAAAUCAGCCACA (((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). (-20.96 = -20.74 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:35 2006