Locus 3140

Sequence ID 3L_DroMel_CAF1
Location 9,145,608 – 9,145,701
Length 93
Max. P 0.868800
window4899

overview

Window 9

Location 9,145,608 – 9,145,701
Length 93
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -32.02
Consensus MFE -20.45
Energy contribution -20.40
Covariance contribution -0.05
Combinations/Pair 1.05
Mean z-score -2.46
Structure conservation index 0.64
SVM decision value 0.86
SVM RNA-class probability 0.868800
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9145608 93 - 23771897
ACA-ACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGACGCAAAUAAACAGGCAUUGAAGUGCCUGGCGACUG----GCAACUGGCAACUGGC--------------------
...-......(((((.....))).(((((..((((.......)))).......(((((((....)))))))..)))))----))..(.(....).)..-------------------- ( -26.50)
>DroPse_CAF1 725 112 - 1
ACA-ACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGACGCAAAUAAACAGGCAUUGAAGUGCCUCG-GCCUG----GUAACUGGUGCCUGGUGACUGGCGGGGCUUGUGCUU
...-......((((((((((.((...(((((((((.......))))...)))))..))))))))))(((((.-(((..----......)))(((.(....).))))))))....)).. ( -36.60)
>DroEre_CAF1 12553 101 - 1
ACA-ACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGACGCAAAUAAACAGGCAUUGAAGUGCCUGGCGACUG----CCAACUGGCAACUGGCAACUGGCG------------
...-.....((((((.....))).(((((..((((.......)))).......(((((((....)))))))((.(.((----((....))))..).))))))))))------------ ( -33.30)
>DroYak_CAF1 13695 93 - 1
ACA-ACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGUCGCAAAUAAACAGGCAUUGAAGUGCCUGGCGACUG----CCAACUGGCAACUGGC--------------------
...-......(((((.....))).(((((...........((((((.......(((((((....)))))))))))))(----((....))))))))))-------------------- ( -30.21)
>DroAna_CAF1 704 92 - 1
ACA-ACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGACGCAAAUAAACAGGCAUUGAAGUGCCUU-CGCCUGGCAGUCAACUGGCGA----C--------------------
...-......((((((((((.((...(((((((((.......))))...)))))..))))))))))))..(-((((.(........).)))))----.-------------------- ( -28.60)
>DroPer_CAF1 707 113 - 1
ACAUACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGACGCAAAUAAACAGGCAUUGAAGUGCCUCG-GCCUG----GUAACUGGUGCCUGGUGACUGGCGGGGCUUGUGCUU
...(((((....((((((((.((...(((((((((.......))))...)))))..))))))))))(((((.-(((..----......)))(((.(....).)))))))))))))... ( -36.90)
>consensus
ACA_ACAAACGCGCUUUAAUAGCACAGUUUAGCGUAGAAUAGACGCAAAUAAACAGGCAUUGAAGUGCCUGGCGACUG____GCAACUGGCAACUGGC____________________
..........(((((.....))).(((((..((((.......))))........((((((....))))))..............)))))))........................... (-20.45 = -20.40 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:34 2006