Locus 3139

Sequence ID 3L_DroMel_CAF1
Location 9,135,830 – 9,135,935
Length 105
Max. P 0.905986
window4898

overview

Window 8

Location 9,135,830 – 9,135,935
Length 105
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 71.88
Mean single sequence MFE -30.30
Consensus MFE -21.57
Energy contribution -22.24
Covariance contribution 0.67
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.71
SVM decision value 1.04
SVM RNA-class probability 0.905986
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9135830 105 + 23771897
AGAGCCCAGUAGCCGA---------------GCUACUGCGGCCAGUCAAACCUUUUUGCGGUGUCAAAAACACGUGAGACAAAAGAAGGUACCGUCGAUAGUCAUGCAAUCCCUGGAUUU
.(.((((((((((...---------------))))))).))))......((((((((...((.(((........))).))..)))))))).(((..(((.(.....).)))..))).... ( -31.30)
>DroPse_CAF1 4913 116 + 1
UGCGCCCAGUAGCCUAGCUAGCUAUCAACUAGCUACUGCGGCCAGUCAAACCUUUUUGUGGUGUCAGAUACACCCAUU----UUUCAGGUACCCUUUUGUUUCAUGCUAUUCCAGAUGGU
((.((((((((((.(((...........)))))))))).))))).....((((...((.(((((.....)))))))..----....))))...............((((((...)))))) ( -28.30)
>DroSec_CAF1 3857 105 + 1
AGAGCCCAGUAGCCGA---------------GCUACUGCGGCCAGUCAAACCUUUUUGCGGUGUCAAAAACACGUGAGACAAAAGAAGGUACCGUCGAUAGUCAUGCAAUCCCUGGAAUU
.(.((((((((((...---------------))))))).))))......((((((((...((.(((........))).))..)))))))).(((..(((.(.....).)))..))).... ( -31.30)
>consensus
AGAGCCCAGUAGCCGA_______________GCUACUGCGGCCAGUCAAACCUUUUUGCGGUGUCAAAAACACGUGAGACAAAAGAAGGUACCGUCGAUAGUCAUGCAAUCCCUGGAAUU
.(.((((((((((..................))))))).))))......((((((((.((((((.....)))).))......)))))))).............................. (-21.57 = -22.24 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:33 2006