| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,133,520 – 9,133,628 |
| Length | 108 |
| Max. P | 0.654440 |
| Location | 9,133,520 – 9,133,628 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.51 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -24.87 |
| Energy contribution | -24.87 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9133520 108 - 23771897 GUGAGGUCGAACUACCGCAGUUCCGAGUUUUGGGACACAGGCAGAGGGCGACCGAAAUAAACCUAACCACAGGUACCCCCAUACAUUC--AAAAAUCAUACCAA-AUCGUA--------- (((((((((..((.((...(((((((...)))))))...))...))..))))).......((((......))))..............--.....)))).....-......--------- ( -26.20) >DroPse_CAF1 2207 119 - 1 GUGAGGUCGAACUACCGCAGUUCCGUGUCUUGGGACACAGGCAGAGGGCGACCGAAAUAAACCUAACCACAGGUACC-CCAUACAUUACAAAAAACCAUAAAAAAAGCGUACAAUUUCCA (((((((((..((.((...((((((.....))))))...))...))..))))).......((((......))))...-.......))))............................... ( -26.70) >DroSec_CAF1 1581 108 - 1 GUGAGGUCGAACUACCGCAGUUCCGAGUUUUGGGACACAGGCAGAGGGCGACCGAAAUAAACCUAACCACAGGUACCCCCAUACAUUA--AAAAAUCAUACCAA-AUCGUA--------- (((((((((..((.((...(((((((...)))))))...))...))..))))).......((((......))))..............--.....)))).....-......--------- ( -26.20) >consensus GUGAGGUCGAACUACCGCAGUUCCGAGUUUUGGGACACAGGCAGAGGGCGACCGAAAUAAACCUAACCACAGGUACCCCCAUACAUUA__AAAAAUCAUACCAA_AUCGUA_________ (((.(((((..((.((...((((((.....))))))...))...))..))))).......((((......)))).......))).................................... (-24.87 = -24.87 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:32 2006