Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,132,628 – 9,132,730 |
Length | 102 |
Max. P | 0.659739 |
Location | 9,132,628 – 9,132,730 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.42 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -21.05 |
Energy contribution | -20.17 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -0.36 |
Structure conservation index | 0.90 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9132628 102 + 23771897 AUGAUA-AAGAUUGUUGAGCUUUCAGUAGGCACGCUCU---GUUCGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAG--------------GGUUGCUUAAGACUAAAAAACUU ......-.....(.((((((..((.(((((..((....---...)).))))).((((((((..((....))..))))))))..--------------))..)))))).)........... ( -21.80) >DroPse_CAF1 1183 119 + 1 -GAAUAAAAGUUAGAUGAGCAUUUAGUAGGCACACUCCCUGGAUUGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAAUUAUGAUUGUAUUAGAUUGCUUAAAGCUAUGGUACUU -.......((((...(((((((((((((((..((.((....)).)).))))).((((((((..((....))..))))))))..............)))).)))))).))))......... ( -25.00) >DroSec_CAF1 704 101 + 1 -UGAUA-AAGAUUGAUGAGCUUUCAGUAGGCACGCUCU---GUUCGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAG--------------GGUUGCUUAAGACUAGAAAACUU -.....-.........(((.((((((((((((.(((((---((.......)).((((((((..((....))..))))))))))--------------))))))))...))).)))).))) ( -23.40) >consensus _UGAUA_AAGAUUGAUGAGCUUUCAGUAGGCACGCUCU___GUUCGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAG______________GGUUGCUUAAGACUAAAAAACUU ...............(((((..((.(((((..((..(....)..)).))))).((((((((..((....))..))))))))................))..))))).............. (-21.05 = -20.17 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006