| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,129,969 – 9,130,068 |
| Length | 99 |
| Max. P | 0.843370 |
| Location | 9,129,969 – 9,130,068 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.91 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -13.06 |
| Energy contribution | -13.62 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9129969 99 - 23771897 UAACCAUCUACAUAAUAAAACCUGAAUUAAUUUUCUAAUAACAACGAUUAUUGCUUCGGUUAAGUCGAAGCGAGAACAUCCUUGCAGAAAAAUCCCCAA ..............................((((((........(((((...((....))..)))))..(((((......)))))))))))........ ( -17.00) >DroSec_CAF1 5006 99 - 1 UAACCAUCUACAUAAUAAAACCUGAAUUAAUUUCCUAAUAACAACGAUUAUUGCUUCGGGUAAAUCGAAGCGAGGACAUCCUUGCACAAUAAUCCCUAA .............................................((((((((.(((((.....)))))((((((....)))))).))))))))..... ( -20.00) >DroEre_CAF1 5086 99 - 1 UAACCAUCUACAUAAUAAAACCCGAAUUCAUUUCUUAAUACCAACGAUUACUGCUUCGGUUAAGUCGAAGCGAGGACAUCCUUGCAGAAUAAUCCUUAA .........................((((...............(((((...((....))..)))))..((((((....)))))).))))......... ( -19.20) >DroYak_CAF1 5144 99 - 1 UAACCAUCUACCUAAUAAAACCUGAACUAAUUUCCUAAUAACAACGAUUAUUGCUUCGGUUAAGUCGAAGCGAAGACAUCCUUGCAGAAUAAUCCUAUA .............................................((((((((((((((.....))))))).(((.....)))....)))))))..... ( -13.50) >consensus UAACCAUCUACAUAAUAAAACCUGAAUUAAUUUCCUAAUAACAACGAUUAUUGCUUCGGUUAAGUCGAAGCGAGGACAUCCUUGCAGAAUAAUCCCUAA ............................................(((((...((....))..)))))..((((((....)))))).............. (-13.06 = -13.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:28 2006