Locus 3132

Sequence ID 3L_DroMel_CAF1
Location 9,128,393 – 9,128,489
Length 96
Max. P 0.960096
window4887

overview

Window 7

Location 9,128,393 – 9,128,489
Length 96
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 76.73
Mean single sequence MFE -25.20
Consensus MFE -19.63
Energy contribution -18.47
Covariance contribution -1.16
Combinations/Pair 1.43
Mean z-score -1.77
Structure conservation index 0.78
SVM decision value 1.51
SVM RNA-class probability 0.960096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9128393 96 - 23771897
A------AAACUAUUUCGCAUUUCCUAUGGAGCCAAAGGACC--AGAGAA-AGUCUAUCCAUAGGAAUGCUGAAAUGCACUGCACCU-GAGGCACUGUUAAGGGGU
.------..(((((((((((((.((((((((......((((.--......-.)))).))))))))))))).)))))(((.(((....-...))).))).....))) ( -26.90)
>DroPse_CAF1 3747 103 - 1
ACCUACAUACAUAUUUCACAUU-AUUAUGGAGCCAACAGGCUUACGAGAA-AGUCUAUCUAUAAGGAUGCUGAAAUGCACUGCACUGAAAGGCACUGUAAUGG-GU
(((((........(((((((((-.(((((((......((((((......)-))))).))))))).)))).)))))((((.(((........))).)))).)))-)) ( -25.50)
>DroEre_CAF1 3521 95 - 1
A-------AACUGUUUCGCAUUUCUUAUGGAGCCAAAGGACC--AGAAAA-AGUCUAUCCAUAGGGAUGCCGAAAUGCACUGCACCU-GAGGCACUGUAAAGGGGU
.-------.(((.(((..((.((((((((((......((((.--......-.)))).))))))))))((((....(((...)))...-..)))).))..))).))) ( -24.70)
>DroYak_CAF1 3567 96 - 1
A------AAACUAUUUCGCAUUUCUUAUGGAGCCAAAGGACC--AGAAAA-AGUCCAUCCAUAGAGAUGCUGAAAUGCACUGCACCU-GAGGCACUGUAAAGGGGU
.------.....((..(((((((((.(((((......((((.--......-.)))).))))))))))))).....((((.(((....-...))).))))..)..)) ( -27.30)
>DroAna_CAF1 3909 87 - 1
--------AACUAUUUCACUUUUCUUAUGGAGCCAACAGACU--GCAAACUGGUCCAUCCAUAAGGACGCUGAAAUGCACUGCACUU-GAGGCACAGC--------
--------....((((((.(.((((((((((.....(((...--.....))).....)))))))))).).))))))((..(((.(..-..))))..))-------- ( -21.30)
>DroPer_CAF1 3767 103 - 1
ACCUACAUACAUAUUUCACAUU-AUUAUGGAGCCAACAGGCUUACGAGAA-AGUCUAUCUAUAAGGAUGCUGAAAUGCACUGCACUGAAAGGCACUGUAAUGG-GU
(((((........(((((((((-.(((((((......((((((......)-))))).))))))).)))).)))))((((.(((........))).)))).)))-)) ( -25.50)
>consensus
A_______AACUAUUUCACAUUUCUUAUGGAGCCAAAAGACC__AGAAAA_AGUCUAUCCAUAAGGAUGCUGAAAUGCACUGCACCU_GAGGCACUGUAAAGG_GU
............(((((((((((.(((((((......((((...........)))).)))))))))))).))))))(((.(((........))).)))........ (-19.63 = -18.47 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:22 2006