Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,127,747 – 9,127,842 |
Length | 95 |
Max. P | 0.953736 |
Location | 9,127,747 – 9,127,842 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.10 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -23.41 |
Energy contribution | -23.55 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.16 |
Mean z-score | -1.96 |
Structure conservation index | 0.90 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9127747 95 - 23771897 AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU .........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -26.70) >DroSec_CAF1 2826 95 - 1 AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCAAGACGAACAAAU .........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((.(.....).)).)))))).... ( -23.80) >DroSim_CAF1 2820 95 - 1 AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU .........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -26.70) >DroEre_CAF1 2864 94 - 1 -AGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU -........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -26.70) >DroYak_CAF1 2891 95 - 1 AAGCCUCUCCAUGUGUACGAGCUCGUACACAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU .........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -28.60) >DroAna_CAF1 3228 107 - 1 UAGCCUCUCCAUAUAUACAAUC-CGUAUAUAUGCCAGUACUAUAUACUUACUUAUAUAGAAGCCGACUCUCAGGUUGAGUUUGUGUUCAAGCACCC-AGACGAGCAAAU ..((.((..(((((((((....-.)))))))))...((.(((((((......)))))))(((((((((....))))).))))((((....))))..-..)))))).... ( -23.60) >consensus AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA_____UCUAUUU_______UAAUAGCCGAC__UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU .........((((((((((....))))))))))..........................(((((........))))).((((((.((((......)))))))))).... (-23.41 = -23.55 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:21 2006