Locus 313

Sequence ID 3L_DroMel_CAF1
Location 908,330 – 908,428
Length 98
Max. P 0.776609
window469

overview

Window 9

Location 908,330 – 908,428
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 72.48
Mean single sequence MFE -23.27
Consensus MFE -14.68
Energy contribution -14.72
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 0.63
SVM decision value 0.54
SVM RNA-class probability 0.776609
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 908330 98 + 23771897
CG---CCGCCAGU--CGCCCCUUUUUUUUUACCAGCCAUUUCUUCUUUUUGUUCUGCGGCCGCAGUAACGAAAAUCUAAUUAAAGCCCCUGUCGCUGGU--GGGC
..---((((((((--.((...........................((((((((((((....)))).)))))))).((......)).....)).))))))--)).. ( -24.70)
>DroSec_CAF1 50700 79 + 1
CG---CCGCC-------CCCCUUUUU--------------UCUUAUUUUUGUUCUGCGGCCGCAGUAACGAAAAUCCAAUUAAAGCCGCUGUCGCUGGU--GGGC
..---..(((-------(((((((..--------------....(((((((((((((....)))).)))))))))......))))..((....)).)).--)))) ( -23.40)
>DroEre_CAF1 54187 99 + 1
CAAACCCUCCACC----CCCCGCAAUUUUUUCCAGCCAUUUCUUCUUUUUGUUCUGCGGCCGCAGUAACGAAAAUCCAAUUAAAGCCCCUGUCGCUGGU--GGGC
.......((((((----............................((((((((((((....)))).)))))))).........(((.......))))))--))). ( -21.00)
>DroYak_CAF1 53133 84 + 1
----------AC---------CCGAUUUUUUCCAGCCAUUUCUUCUUUUUGUUCUGCGGCCGCAGUAACGAAAAUCCAAUUAAAGCCCCUGUCGCUGGU--GGGC
----------.(---------(((.......(((((.........((((((((((((....)))).))))))))..........((....)).))))))--))). ( -20.11)
>DroAna_CAF1 56228 98 + 1
UGUAUCCUGCCCCUCCUGCCCUUUUCUUUUA-------CGUUUUUUUUUUGUUUUGCGGCCGCAGCAACGAAAAUCCAAUUAAAGCCCCUGUCGUUGGGAGGGGC
........(((((((((..(.....((((..-------.(((...((((((((((((....)))).))))))))...))).))))........)..))))))))) ( -27.12)
>consensus
CG___CCGCCAC_____CCCCUUUUUUUUUACCAGCCAUUUCUUCUUUUUGUUCUGCGGCCGCAGUAACGAAAAUCCAAUUAAAGCCCCUGUCGCUGGU__GGGC
.............................................((((((((((((....)))).))))))))..........((((.............)))) (-14.68 = -14.72 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:00 2006