Locus 3127

Sequence ID 3L_DroMel_CAF1
Location 9,114,504 – 9,114,594
Length 90
Max. P 0.541714
window4876

overview

Window 6

Location 9,114,504 – 9,114,594
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -37.17
Consensus MFE -22.74
Energy contribution -24.60
Covariance contribution 1.86
Combinations/Pair 1.20
Mean z-score -2.00
Structure conservation index 0.61
SVM decision value 0.02
SVM RNA-class probability 0.541714
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9114504 90 + 23771897
GAUCGUACCUUCAGCGAUAGUGAGGAUGAGCCCGAAGUGCGUC------------CAUCGGCAGCGGCAGCUUCUUCUGCAGCUGCUGCCUCGUCAUCCAUG
.(((((.......))))).....((((((((.......))...------------....(((((((((.((.......)).)))))))))...))))))... ( -34.00)
>DroSec_CAF1 1783 90 + 1
GAUCGUACCUUCAGCGAUAGUGAGGAUGAGCCCGAAGUGCGUC------------CUUCGGCGGCGGCAGCUUCUUCUGCAGCUGCUGCCUCGUCAUCCAUG
.(((((.......))))).....(((((((((.((((......------------)))))))((((((((((.(....).))))))))))...))))))... ( -41.00)
>DroSim_CAF1 1783 90 + 1
GAUCGUACCUUCAGCGAUAGUGAGGAUGAGCCCGAAGUGCGUC------------CUUCGGCGGCGGCAGCUUCUUCUGCAGCUGCUGCCUCGUCAUCCAUG
.(((((.......))))).....(((((((((.((((......------------)))))))((((((((((.(....).))))))))))...))))))... ( -41.00)
>DroEre_CAF1 3530 90 + 1
GAUCGUACCUUCAGCGAUAGCGAUGAUGAGCCCGAGGUGCGUC------------CUUCGGCUGCGGCCGCUUCCUCUGCAGCUGCUGCCUCCUCAUCCAUG
.(((((.......)))))......((((((...((((......------------))))(((.(((((.((.......)).))))).)))..)))))).... ( -30.50)
>DroYak_CAF1 1813 90 + 1
GAUCGCACCUUCAGCGACAGUGAGGACGAGCCCGAAGUGCGUC------------CUUCAACGGCGGCAACUUCUUCGGCAGCUGCCGCCUCCUCAUCGAUG
..((((.......))))(.(((((((.......((((......------------))))...(((((((.((.(....).)).)))))))))))))).)... ( -35.30)
>DroPer_CAF1 5174 99 + 1
GAUCGCACAUUCAGCGACAGCGAUGAUGAGCCCGAGGAGCGUGCGGCAACUGGAUCUUCUGCAGCAGCUGCUGCUGCCGCAGCUCCUACCUCCGC---AAUG
..((((.......))))..(((.....(((....((((((.(((((((...((.....))(((((....))))))))))))))))))..))))))---.... ( -41.20)
>consensus
GAUCGUACCUUCAGCGAUAGUGAGGAUGAGCCCGAAGUGCGUC____________CUUCGGCGGCGGCAGCUUCUUCUGCAGCUGCUGCCUCCUCAUCCAUG
.(((((.......))))).....(((((((((....).))...................(((((((((.((.......)).)))))))))...))))))... (-22.74 = -24.60 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:12 2006