Locus 3126

Sequence ID 3L_DroMel_CAF1
Location 9,103,272 – 9,103,379
Length 107
Max. P 0.914774
window4875

overview

Window 5

Location 9,103,272 – 9,103,379
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 66.67
Mean single sequence MFE -26.33
Consensus MFE -13.82
Energy contribution -14.30
Covariance contribution 0.48
Combinations/Pair 1.24
Mean z-score -1.79
Structure conservation index 0.52
SVM decision value 1.10
SVM RNA-class probability 0.914774
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9103272 107 - 23771897
GUGUGCGAAAGAGAGGGCGGCGAAAGGUGGGAAAAAGACAGAAUGUCUGUCACCCGCGCGACCAACUUAAAUACCCUGUACUUAUGUGAGGGAAUAUUGUAGAACAG
((.(((((..(((..((((.(....)(((((.....(((((.....))))).))))).)).))..))).....((((.(((....)))))))....)))))..)).. ( -31.90)
>DroYak_CAF1 24570 107 - 1
GUGUGCGAAAGAGAGGGCGGCGGAAGGUGGGAAAAAGACAGAAUGUCUGUCACCCGCGCGACCAACUUAAAUACCCUAUACUUAAGUGGGGGGAUGUGAUAGAACAG
.(((.(....(((..((((.(....)(((((.....(((((.....))))).))))).)).))..))).....((((((......))))))..........).))). ( -29.70)
>DroAna_CAF1 18604 81 - 1
AGGUGUGAGUGGGAGGG----------------AAAGAUAG------UGUCACCCGCGCGAUUAACUUAGAUACUAAAUAGUGAC----AGGUAGAUCGAAGAAAAG
........(((((.((.----------------(.......------).)).))))).(((((.((((.(.((((....)))).)----)))).)))))........ ( -17.40)
>consensus
GUGUGCGAAAGAGAGGGCGGCG_AAGGUGGGAAAAAGACAGAAUGUCUGUCACCCGCGCGACCAACUUAAAUACCCUAUACUUAAGUG_GGGAAUAUCGUAGAACAG
..(((((..........((.(....).)).......(((((.....)))))...)))))..............((((...........))))............... (-13.82 = -14.30 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:11 2006