Locus 3123

Sequence ID 3L_DroMel_CAF1
Location 9,088,430 – 9,088,522
Length 92
Max. P 0.740604
window4870

overview

Window 0

Location 9,088,430 – 9,088,522
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 83.14
Mean single sequence MFE -34.12
Consensus MFE -22.42
Energy contribution -22.26
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value 0.45
SVM RNA-class probability 0.740604
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9088430 92 - 23771897
CAGGGGGGGGGGGGGGCGGAGCGUUCAGUGAUAAAUGCCCGACGAUAAGCGACCAGCACGGCGGGCAAUGGAGCGCGUCGCCCAUCAUCGAU
.......(..(..(((((..(((((((....)...((((((.((....((.....)).)).))))))...))))))..)))))..)..)... ( -36.30)
>DroSec_CAF1 7475 82 - 1
----------UGGGGGCGGAGCGUUCAGAGAUAAAUGCCCGGCGAUAAGCGACCAGCACGGCGGGCAAUGGAGCGCGUCGCCCAUCAUCGAU
----------((((((((..((((((.........((((((.((....((.....)).)).))))))...))))))..))))).)))..... ( -37.40)
>DroSim_CAF1 10824 78 - 1
--------------AACGCUCCGUUCAGAGAUAAAUGCCCGGCGAUAAGCGACCAGCACGGCGGGCAAUGGAGCGCGUCGCCCAUCAUCGAU
--------------..((((((((...........((((((.((....((.....)).)).)))))))))))))).((((........)))) ( -27.90)
>DroEre_CAF1 7561 82 - 1
----------UGGGCGUGGAGCUCUCAGAGAUAAAUGCCCGCCGAUAAGCGACCAGCACGGCGGGCAAUGGAGCGCGUCGCCCAUCAUCGAU
----------((((((....((((.((........(((((((((....((.....)).))))))))).))))))....))))))........ ( -38.20)
>DroYak_CAF1 9354 76 - 1
----------UGGGCGGCGG------ACAGAUAAAUGCCCGGCGAUAAGCGACCAGCACGGCGGGCAAUGGAGCGCGUUGCCCAUCAUCGAU
----------((((((((((------.((......((((((.((....((.....)).)).)))))).))...).)))))))))........ ( -30.80)
>consensus
__________UGGGCGCGGAGCGUUCAGAGAUAAAUGCCCGGCGAUAAGCGACCAGCACGGCGGGCAAUGGAGCGCGUCGCCCAUCAUCGAU
.............................(((...((((((.((....((.....)).)).))))))((((.(((...))))))).)))... (-22.42 = -22.26 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:07 2006