| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,081,021 – 9,081,138 |
| Length | 117 |
| Max. P | 0.672546 |
| Location | 9,081,021 – 9,081,138 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 91.01 |
| Mean single sequence MFE | -24.74 |
| Consensus MFE | -18.99 |
| Energy contribution | -19.19 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.672546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9081021 117 + 23771897 UUAUUCAGGGCAGCUCUCAACGAAAAAUUGGCGACUACGAAAAUUUGUUUACUUUAUGUUUUUCUU-UUUUUCGGAUUUAACCUAUUUU-GUGGUGGUUGAUUUUUGGUGGUUUUUGGU ....(((((..((((....((.((((((..((.((((((((((...(...((.....))....)..-.)))))((......))......-))))).))..)))))).))))))))))). ( -23.60) >DroSec_CAF1 164 114 + 1 UUAUUCAGGGCAGCUCUCAACGAAAAAUUGGCGACUACGAAAAUUUGUUUACUUUGUUUUUCUUUUUUUUUUCGGAUUUAACCUAUUUU-GUGGUGGUUGAUUUUUGGUGGU----GGU ............(((..((.(.((((((..((.(((((((((....(((...((((................))))...)))...))))-))))).))..)))))).)))..----))) ( -23.59) >DroSim_CAF1 1454 114 + 1 UUAUUCAGGGCAGCUCUCAACGAAAAAUUGGCGACUACGAAAAUUUGUUUACUUUAUGUUUUUCUUUUUUUUCGGAUUUAACCUAUUUU-GUGGUGGUUGAUUUUUGGUGGU----GGU ............(((..((.(.((((((..((.(((((((((........((.....))..............((......))..))))-))))).))..)))))).)))..----))) ( -23.80) >DroEre_CAF1 141 112 + 1 UUAUUCAGGGCAGCUCUCAACGAAAAAUUGGCGACUACGAAAAUUUGUUUAGUUUAUGUUUUUC---UUUUUUGGAUUUAACCUAUUUUGGUGGUAGUUGAUUUUUGAUUGUU----GU .........(((((..((((....((((..((.(((((.(((((..(((.((((((........---.....)))))).)))..))))).))))).))..))))))))..)))----)) ( -26.22) >DroYak_CAF1 1903 113 + 1 UUAUUCAGGGCAGCUCUCAACGAAAAAUUGGCGACUACGAAAAUUUGUUUACUUUUU-UGUUUU---UUUUUUGGAUUUAACCUAUUUU-GUGGUGGUUGAUUUUUGGUUGUUAUU-GU .........((((....((((.((((((..((.(((((((((........((.....-.))...---......((......))..))))-))))).))..)))))).))))...))-)) ( -26.50) >consensus UUAUUCAGGGCAGCUCUCAACGAAAAAUUGGCGACUACGAAAAUUUGUUUACUUUAUGUUUUUCUU_UUUUUCGGAUUUAACCUAUUUU_GUGGUGGUUGAUUUUUGGUGGUU___GGU .......(((.....))).((.((((((..((.(((((.(((((..(((..............................)))..))))).))))).))..)))))).)).......... (-18.99 = -19.19 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:06 2006