| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,064,730 – 9,064,831 |
| Length | 101 |
| Max. P | 0.678526 |
| Location | 9,064,730 – 9,064,831 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.26 |
| Mean single sequence MFE | -42.38 |
| Consensus MFE | -21.68 |
| Energy contribution | -21.98 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9064730 101 - 23771897 A----UCUGAGUCUGGGAAUACC-UCUGACUGCGAGGUGGUGGCCCAGCGCUGCAGUGCAGCGCAACAUCUUCAGUGUGAUUGCAGUUGUGCUCGCCCCAGUUCCA .----...(((.(((((..((((-((.......))))))(((((.(((((((((...)))))(((((((.......))).)))).)))).)).))))))))))).. ( -38.50) >DroPse_CAF1 11435 98 - 1 AGCGCUUUGAGGCGG------CUUGCUGA--UCGAGGAGGUGGUCCUGCCGAGCAAUGCAGGGCCACAUCCUCGGUGUGAUUGCAGUUGUGGUCGCCCCAGUUCCA ...(((....)))((------...(((((--(((((((.((((((((((........)))))))))).))))))))(((((..(....)..)))))..)))).)). ( -49.90) >DroEre_CAF1 10136 101 - 1 A----UUUGAGUCUGGGAAUGCU-UCUGACUGCGAGGUGGUGGCCCGGCGGUGCAGUGCAGCGCCACGUCUUCGGUGUGAUUGCAAUUGUGCUCGCCCCAGUUCCA .----...(((.(((((..(((.-.((((((((..(((....)))..))))).))).)))(((.((((.(....)))))...(((....))).))))))))))).. ( -35.60) >DroYak_CAF1 10070 101 - 1 A----GUUGAGUCUGGGAAUAUU-UCUGGCUGCGAGGCGGUGGCCCAGCGCUGCAGUGCAGCGCCACAUCCUCGGUGUGGUUGCAGUUGUGCUCGCCCCAGUUCCA .----...(((.(((((..(((.-.(((((((((..((((((......))))))..))))))(((((((.....)))))))..)))..))).....)))))))).. ( -42.80) >DroAna_CAF1 10454 101 - 1 A----UGGGGUUUUGGAAAAGCU-UCUGUGAUCGUGGCGGAGGUCCAGCGGUGCAGUGCAAGGCCACGUCUUCGGUGUGGUUGCAAUUGUGUUCACCCCAGUUCCA .----((((((.((((....(((-(((((.......)))))))))))).((..(((((((..((((((.(....)))))))))).))))..)).))))))...... ( -37.60) >DroPer_CAF1 11451 98 - 1 AGCGCUUUGAGGCGG------CUUGCUGA--UCGAGGAGGUGGUCCUGCCGAGCAAUGCAGGGCCACAUCCUCGGUGUGAUUGCAGUUGUGGUCGCCCCAGUUCCA ...(((....)))((------...(((((--(((((((.((((((((((........)))))))))).))))))))(((((..(....)..)))))..)))).)). ( -49.90) >consensus A____UUUGAGUCUGGGAAU_CU_UCUGACUGCGAGGAGGUGGCCCAGCGGUGCAGUGCAGCGCCACAUCCUCGGUGUGAUUGCAGUUGUGCUCGCCCCAGUUCCA .........................(((.....((((..(((((.(.(((......))).).)))))..))))((.((((..((....))..)))))))))..... (-21.68 = -21.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:05 2006