Locus 3119

Sequence ID 3L_DroMel_CAF1
Location 9,060,610 – 9,060,730
Length 120
Max. P 0.668524
window4862

overview

Window 2

Location 9,060,610 – 9,060,730
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.81
Mean single sequence MFE -30.18
Consensus MFE -20.81
Energy contribution -21.38
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.79
Structure conservation index 0.69
SVM decision value 0.29
SVM RNA-class probability 0.668524
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9060610 120 + 23771897
CCUUCUCAAGUGAACAGAGGAUACCAGACUUCCUUCGAAUCAAAUGGAGGUUAUCAGCCACCUUUGGAAACCAACAAAGGGCACCAGGUACCUUCUCAGAUAAAUGGAGGGUACCAACCA
...((.((..(((.(..((((.........))))..)..)))..))))((((....(((..(((((........))))))))....(((((((((.((......))))))))))))))). ( -36.60)
>DroSec_CAF1 6040 120 + 1
CCUUCUCAAAUAAACAGAGGAUACCAGACUUCCUUUGAACCAAAUGGAGGUUAUCAGCCAUCUUCGGAAACUAACAAUGGGCAUCAGAUACCUUCUCAGUUGAAUGGAGGGUACCAACCA
(((((.((......(((((((.........)))))))...(((..((((((.(((.(((.((....))..(.......))))....)))))))))....)))..)))))))......... ( -29.20)
>DroEre_CAF1 6040 120 + 1
CCUUCUCAAUUCAACAGAGGAUACCAGUCGUCUUUCGAACCAAAUGGAGGUUACCAUCCACCUUCGGAAACCAACACAGGAUACCAGACACCUUCUCAGUUAAAUGGAGGGUACCAACCA
((((((..(((.(((.((((((....)))((((............((((((........))))))((...((......))...)))))).....))).))).)))))))))......... ( -24.60)
>DroYak_CAF1 5952 120 + 1
CCUUCUGAAUUGAACAGAGGAUUCCAGUCAUCCUACGCACCAAAUGGAGGUUACCAGCCAACUUCGGAAACCAACAAAGGGUACCAGAUUCCUGCUCAGUUAAAUGGAGGGUAUCAACCA
(((((..((((((.(((.(((((...((.(((((.....((....)).((((.((..........)).)))).....)))))))..)))))))).))))))....))))).......... ( -30.30)
>consensus
CCUUCUCAAUUGAACAGAGGAUACCAGACUUCCUUCGAACCAAAUGGAGGUUACCAGCCACCUUCGGAAACCAACAAAGGGCACCAGAUACCUUCUCAGUUAAAUGGAGGGUACCAACCA
.(((((.........)))))..........(((............)))((((.............((...((......))...)).(((((((((.((......))))))))))))))). (-20.81 = -21.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:59 2006