Locus 3114

Sequence ID 3L_DroMel_CAF1
Location 9,037,278 – 9,037,385
Length 107
Max. P 0.534152
window4854

overview

Window 4

Location 9,037,278 – 9,037,385
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 87.10
Mean single sequence MFE -31.00
Consensus MFE -21.40
Energy contribution -22.48
Covariance contribution 1.08
Combinations/Pair 1.21
Mean z-score -1.75
Structure conservation index 0.69
SVM decision value 0.00
SVM RNA-class probability 0.534152
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9037278 107 + 23771897
UACUUUGCCAAAAGGCGUUAGCCUAUUGGUGGGCGUGUUGCUUAGACGCAAAUGUUUCAGUGCUUUAAUGCCCACAAAUGGCAGUAAUUUAGAACUGUAACCACAAU
....((((((..((((....))))....((((((((...((...((.((....)).))...))....))))))))...))))))....................... ( -32.40)
>DroSec_CAF1 15705 107 + 1
UAUUUUGCCACAGGGCGUUUGCCUAUUGGUGGGCGUGUUGCUCAGACGCAAAUGUUUCAGUGCUUUAAUGCCCCCAAAUGGCAGUAAUUUAGAACUGUAACCAAAAU
.((((((..((((..(..(((((..((((.((((((...((.(.((.((....)).)).).))....))))))))))..))))).......)..))))...)))))) ( -33.30)
>DroSim_CAF1 16142 107 + 1
UAUUUUGCCAUAAGGCGUUUGCCUAUUGGUGGGCGUGUUGCUCAGACGCAAAUGUUUCAGUACUUUAAUGCUCCCAAAUGGCAGUAAUUUAGAACUGUAACCACAAU
......(((....)))(((..((....))..)))(((((((......))))..(((.((((.((..(.((((.((....)).)))).)..)).)))).))))))... ( -29.80)
>DroEre_CAF1 15974 106 + 1
UAUUUUGCCUUAG-GCGUUAGCCUAUUGGUGGGCGUGUGCCCUGGACGAAAAUGUUUCAGUGCUUUAAUGCACGCAAAUGGCGGUAAUUCAGAACUGUAAGCACAAA
..(((((((.(((-((....))))).....((((....)))).)).))))).(((((((((.((..(.(((.(((.....)))))).)..)).)))).))))).... ( -31.70)
>DroYak_CAF1 16105 105 + 1
CAGUUUGCCAUAGGGCGUCAGCUUAUUGGUGGGCGGGUUCCUCAGACGUAAAUGUUUCAGUGCUUUAAUGCCCCCAAAUGGCAGUAAUUUAGAACCAUAACCACC--
....(((((((.((((....)))).((((.((((((((..((.(((((....))))).)).)))....)))))))))))))))).....................-- ( -27.80)
>consensus
UAUUUUGCCAUAGGGCGUUAGCCUAUUGGUGGGCGUGUUGCUCAGACGCAAAUGUUUCAGUGCUUUAAUGCCCCCAAAUGGCAGUAAUUUAGAACUGUAACCACAAU
....((((((..((((....)))).((((.((((((..((((.(((((....))))).)))).....)))))))))).))))))....................... (-21.40 = -22.48 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:51 2006