| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,036,360 – 9,036,466 |
| Length | 106 |
| Max. P | 0.948029 |
| Location | 9,036,360 – 9,036,466 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.14 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -16.43 |
| Energy contribution | -16.02 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9036360 106 + 23771897 UCGAGCGCAGGCGCUGCUGGCUUGUUAGAACUAAAUAACCAAGCUAAACGUUUGCUACAAAUGAAAAGGGGAAAUGGCAACAAAACAAAAAAUGAAUAAAUAAAAU (((...(((((((.(..((((((((((........))).))))))).))))))))...................((....))..........)))........... ( -19.10) >DroPse_CAF1 15026 91 + 1 UCUAACGCGGGCGUUGCAGGCUUGUUGGAACUAAAUAACCAAGCCAAACGCUUGCUACAAAAUAAA--------------CAAAAUCAAAAA-GAAAAUAUAAAUU ......(((((((((...(((((((((........))).)))))).)))))))))...........--------------............-............. ( -22.90) >DroSec_CAF1 14798 105 + 1 UCGAGUGCGGGCGCUGCUGGCUUGUUAGAACUAAAUAACCAAGCUAAACGUUUGCUACAAAUUAAAAG-GGAAAUGGCAACAAAACAAAAAAUGAAUAAAUAAAAU (((.(((((((((.(..((((((((((........))).))))))).)))))))).))..........-.....((....))..........)))........... ( -19.20) >DroEre_CAF1 15054 102 + 1 UCGAGCGCUGGCGCUGCGGGCUUGUUAGAACUAAAUAACCAAGCUAAACGUUUGCUACAAAUAAAAAG-GAAAAUGACAA-AAAACAAAAAA-GAAUAAAUAAA-A .((((((....)))).))(((((((((........))).))))))...(((((.((...........)-).)))))....-...........-...........-. ( -15.50) >DroYak_CAF1 15193 100 + 1 UCGAGCGCUGGCGCUGCGGGCUUGUUAGAACUAAAUAACCAAGCUAAACGUUUGCUACAAAUGAAAAG-GGAAAUAACAA---AACAAAAAA-UAAUAAAUAAA-U .((((((....)))).))(((((((((........))).))))))...((((((...)))))).....-...........---.........-...........-. ( -17.00) >DroPer_CAF1 15025 91 + 1 UCUAACGCGGGCGUUGCAGGCUUGUUGGAACUAAAUAACCAAGCCAAACGCUUGCUACAAAAUAAA--------------CAAAAUCAAAAA-GAAAAUAUAAAUU ......(((((((((...(((((((((........))).)))))).)))))))))...........--------------............-............. ( -22.90) >consensus UCGAGCGCGGGCGCUGCAGGCUUGUUAGAACUAAAUAACCAAGCUAAACGUUUGCUACAAAUUAAAAG_GGAAAUG_CAACAAAACAAAAAA_GAAUAAAUAAA_U ......(((((((.....(((((((((........))).))))))...)))))))................................................... (-16.43 = -16.02 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:50 2006