Locus 3111

Sequence ID 3L_DroMel_CAF1
Location 9,019,059 – 9,019,149
Length 90
Max. P 0.514184
window4848

overview

Window 8

Location 9,019,059 – 9,019,149
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 95.13
Mean single sequence MFE -27.06
Consensus MFE -23.88
Energy contribution -23.68
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.17
Structure conservation index 0.88
SVM decision value -0.04
SVM RNA-class probability 0.514184
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9019059 90 - 23771897
UAAUGGAGAGCAUUAAUUUGUCUUAGGCCCGCCAAAGCGGUCGCAUAACUGCUUUUGGCCCAGGCACUG-CGAUAUGGCCAAAAACCUGUA
(((((.....)))))...((((.((((((.(((((((((((......))))).))))))...))).)))-.))))................ ( -24.90)
>DroSec_CAF1 57882 90 - 1
UAAUGGAGAGCAUUAAUUUGUCUUAGGCCCGCCAAAGCGGUCGCAGAACCGCUUUUGGCCCAGGCACUG-CGAUAUGGCCAAAAACCUGUA
(((((.....)))))...((((.((((((.(((((((((((......))))).))))))...))).)))-.))))................ ( -27.10)
>DroSim_CAF1 59020 90 - 1
UAAUGGAGAGCAUUAAUUUGUCUUAGGCCCGCCAAAGCGGUCGCAGAACCGCUUUUGGCCCAGGCACUG-CGAUAUGGCCAAAAACCUGUA
(((((.....)))))...((((.((((((.(((((((((((......))))).))))))...))).)))-.))))................ ( -27.10)
>DroEre_CAF1 61258 89 - 1
UAAUGGAGAGCAUUAAUUUGUCUUGGGUCCGCCAAAGCGGCCG-AGAACUGCUUUUGGCCCAGCCACUGGCGGUAUGGCCAA-AACCUGUA
....((.(((((........((((((..((((....)))))))-)))..)))))((((((..(((......)))..))))))-..)).... ( -29.40)
>DroYak_CAF1 60370 89 - 1
UAAUGGAGAGCAUUAAUUUGUCUUAGGCCCGCCAAAGCGGUCGCAGAACUGCUUUUGGCCCAGGCACUG-CGAUAUGGCCAA-AACCUGUA
....((.(((((......)).))).(((((((....)))(((((((...(((((.......))))))))-))))..))))..-..)).... ( -26.80)
>consensus
UAAUGGAGAGCAUUAAUUUGUCUUAGGCCCGCCAAAGCGGUCGCAGAACUGCUUUUGGCCCAGGCACUG_CGAUAUGGCCAAAAACCUGUA
....((.(((((......)).))).((((.(((((((((((......))))).)))))).(((...))).......)))).....)).... (-23.88 = -23.68 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:45 2006