Locus 311

Sequence ID 3L_DroMel_CAF1
Location 906,567 – 906,657
Length 90
Max. P 0.967527
window467

overview

Window 7

Location 906,567 – 906,657
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 78.72
Mean single sequence MFE -20.27
Consensus MFE -14.95
Energy contribution -15.37
Covariance contribution 0.42
Combinations/Pair 1.17
Mean z-score -2.43
Structure conservation index 0.74
SVM decision value 1.61
SVM RNA-class probability 0.967527
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 906567 90 - 23771897
CUGUCGACGUCGCAUUAACCCAUUAAUUAAGGUGACGUCAAAGGCAGCACAGCGCCAAAAGGCGAUAAAGGCA---AGCGAAAUGCGAACGGA
(((((((((((((.((((........)))).))))))))....((.((....((((....))))......)).---.)).......).)))). ( -26.60)
>DroVir_CAF1 59100 75 - 1
-UGCCAGCGUCGCAUUAACCCAUUAAUUAAGGUGACGUCAAAGGCAAC-----GCCGAAA-GCGAUAAAACCAUAAAACGA-----------G
-((((.(((((((.((((........)))).)))))))....)))).(-----(.(....-))).................-----------. ( -18.20)
>DroGri_CAF1 54573 85 - 1
CUGCCAGCGUCGCAUUAACCCAUUAAUUAAGGUGACGUCAAAGGCAGC-----GCCAAAA-ACGAUAAAACCAUAAAACGAUAA--AAACAAG
(((((.(((((((.((((........)))).)))))))....))))).-----.......-.......................--....... ( -17.20)
>DroWil_CAF1 70581 76 - 1
CUGCCAACGUCGCAUUAACCCAUUAAUUAAGGUGACGUCAAAGGCAGC-----GCCAAAA-GCGAUAAAACGA---AGCGAAACC--------
(((((.(((((((.((((........)))).)))))))....)))))(-----((.....-))).........---.........-------- ( -19.40)
>DroMoj_CAF1 61944 84 - 1
CUGCCAGCGUCGCAUUAACCCAUUAAUUAAGGUGACGUCAAAGCCAAC-----GCCAAAA-GCGAUAAAACCAUAAAACGAUAA---AGCAAC
.(((..(((((((.((((........)))).))))))).........(-----((.....-)))....................---.))).. ( -14.90)
>DroAna_CAF1 54152 77 - 1
CUGCCGCCGUCGCAUUAACCCAUUAAUUAAGGCGACGUCAAAGGCAGC-----GCCA-AAGGCGAUAAAGGCC---AGCGAA-------CAGA
(((.(((((((((.((((........)))).)))))).....(((..(-----(((.-..))))......)))---.)))..-------))). ( -25.30)
>consensus
CUGCCAGCGUCGCAUUAACCCAUUAAUUAAGGUGACGUCAAAGGCAGC_____GCCAAAA_GCGAUAAAACCA___AACGAAA______CA_A
(((((.(((((((.((((........)))).)))))))....)))))......((......)).............................. (-14.95 = -15.37 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:58 2006