| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,012,030 – 9,012,128 |
| Length | 98 |
| Max. P | 0.977539 |
| Location | 9,012,030 – 9,012,128 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.41 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -25.08 |
| Energy contribution | -24.97 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9012030 98 - 23771897 --------UUUUU--GGUAUUCCAUGGAUGAUCGAUGGCCUGUCGUUGAGAUGAUCACUUUCUGUAGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGACGA----UCCA-------- --------...((--(((..((....))..)))))(((..((((((((((....(((((....((((((((...)))))))).)).)))....)))))))))).----.)))-------- ( -33.20) >DroVir_CAF1 73499 82 - 1 -----------------------UUGAAUGAUCGAUGGACUGUCGUUGAGAUGAUCACUUCUCGUGGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGACGC----G----------- -----------------------..................(((((((((...(((.(..((.((((((((...)))))))).))..).))).)))))))))..----.----------- ( -27.30) >DroWil_CAF1 71359 97 - 1 ---------UUUU--UUUUUUUGUGGAAUGAUCGAUGGCCUGUCGUUGAGAUGAUCACUUUCUGUGGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGAUGA----GCCA-------- ---------....--....................((((..(((((((((....(((((....((((((((...)))))))).)).)))....)))))))))..----))))-------- ( -32.30) >DroYak_CAF1 53332 101 - 1 ---------UUUUUAA--AUUUCUGGAAUGAUCGAUGGCCUGUCGUUGAGAUGAUCACUUUCUGUAGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGACGAGAGGGCCA-------- ---------.......--.................(((((((((((((((....(((((....((((((((...)))))))).)).)))....)))))))))....))))))-------- ( -35.10) >DroMoj_CAF1 62273 93 - 1 -----------------------UUGAAUGAUCGAUGGACUGUCGUUGAGAUGAUCACUUCUCGUGGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGAUGA----GCCACCGAGCCA -----------------------........(((.(((..((((((((((...(((.(..((.((((((((...)))))))).))..).))).)))))))))).----.))).))).... ( -33.60) >DroAna_CAF1 49809 106 - 1 AUCUCCGGUCUCC--GGUAUUUGUUGAAUGAUCGAUGGCCUGUCGCCGAGAUGAUCACUUUCCGUGGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGACGA----CCCG-------- ......((((((.--((((((((..((.((((((.((((.....))))...)))))).))..)((((((((...))))))))......)))))))....)).))----))..-------- ( -31.70) >consensus _________UUUU_____AUUU_UUGAAUGAUCGAUGGCCUGUCGUUGAGAUGAUCACUUUCCGUGGCUGCCUAGCGGCUACUAGUUGAGAUACUUAACGACGA____GCCA________ .........................................(((((((((....(((((....((((((((...)))))))).)).)))....))))))))).................. (-25.08 = -24.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:43 2006