Locus 3108

Sequence ID 3L_DroMel_CAF1
Location 9,006,853 – 9,006,949
Length 96
Max. P 0.939817
window4845

overview

Window 5

Location 9,006,853 – 9,006,949
Length 96
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 77.43
Mean single sequence MFE -32.07
Consensus MFE -19.57
Energy contribution -19.68
Covariance contribution 0.12
Combinations/Pair 1.29
Mean z-score -2.09
Structure conservation index 0.61
SVM decision value 1.28
SVM RNA-class probability 0.939817
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9006853 96 + 23771897
ACUGGCGCUGGGCUCUGCCCCCCAG-UGCAAGUGAGCGGAUGGCUCCCAAAGAGAGAUGCCCACUUGGCUAG-AACAUAGCUGA--AGAUAACUAUUA----AA
....((((((((........)))))-)))(((((.(((.....(((.....)))...))).)))))(((((.-....)))))..--............----.. ( -30.10)
>DroSec_CAF1 45765 96 + 1
ACUGGCGCUGGGAUCUGCCCCCCAG-UGCAAGUGAGCGGAUGCCUCCCAAAGGGAGAUGCCCACUUGGCUAG-AACAUAGCUAA--AUACAACUAUUA----CA
....((((((((........)))))-)))(((((.(((.....(((((...))))).))).)))))(((((.-....)))))..--............----.. ( -34.60)
>DroSim_CAF1 46566 96 + 1
ACUGGCGCUGGGCUCUGCCCCCCAG-UGCAAGUGAGCGGAUGGCUCCCAAAGAGAGAUGCCCACUUGGCUAG-AACAUAGCUAA--AUACAAAUAUUA----AA
....((((((((........)))))-)))(((((.(((.....(((.....)))...))).)))))(((((.-....)))))..--............----.. ( -30.10)
>DroEre_CAF1 46785 96 + 1
ACUGGCGCUGGGUUCUGCCCCCCAG-UGCAAGUGAGCGGUUGGCUCUCAAGGAGGGAUGCGCAUUUGGCUAA-AACAUGGCUGG--AUGCAUCUAAUA----AA
(((.((((((((........)))))-))).)))..(((.....(((((...))))).)))(((((..((((.-....))))..)--))))........----.. ( -38.10)
>DroYak_CAF1 47904 100 + 1
ACUGGCGCUGGGCUCUGCCCCCCAG-UGCAAGUGAGUGGAUUGCCUCCAAGGAGGGAUGCCCACUUGGCUAA-AACAUAGCUGG--AUACGGCUUAUUUGGGAA
(((.((((((((........)))))-))).)))((((((..(.((((....)))).)...))))))..((((-(....(((((.--...)))))..)))))... ( -40.30)
>DroAna_CAF1 45179 91 + 1
ACUGGCGCUGGUCUCUGCCCCCCCGAAGCAAGUAA--------CUCUCAGUCAGAGUUGCUAACUUGGCCAAUAAAAUAAAUUAAGAAAUAAAUAUUC----U-
..((((((((((....))).......))).(((((--------((((.....)))))))))......))))...........................----.- ( -19.21)
>consensus
ACUGGCGCUGGGCUCUGCCCCCCAG_UGCAAGUGAGCGGAUGGCUCCCAAAGAGAGAUGCCCACUUGGCUAA_AACAUAGCUGA__AUACAACUAUUA____AA
..((((.(((((........)))))...((((((.(((.....(((.......))).))).))))))))))................................. (-19.57 = -19.68 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006