| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,002,307 – 9,002,412 |
| Length | 105 |
| Max. P | 0.509617 |
| Location | 9,002,307 – 9,002,412 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.26 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -17.86 |
| Energy contribution | -17.84 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9002307 105 + 23771897 -ACUCAAUUCC-----A----AGCGACGAUUGCUGCACGCAAGUGAAAAAUGUUGGCGCCAGGCGCCACUAAAAAAUCUUAUGAAUGAAGUAGACACAUUUUU--GAGUUGUCGGUG -..........-----.----..((((((((....(((....)))((((((((((((((...))))))(((.....((....))......)))..))))))))--.))))))))... ( -28.80) >DroVir_CAF1 62579 100 + 1 -ACUCAAGCU-----------GCUGCCGCUUGCAGCACGCAAGUGAAAAAUGUUGGCGCCAGGCGCCACUAAAAAAUCUUAUGAAUGAAGUAGACACAUUUUU--U---UGUGGCUG -.....(((.-----------.(...(((((((.....)))))))((((((((((((((...))))))(((.....((....))......)))..))))))))--.---.)..))). ( -30.50) >DroGri_CAF1 43588 100 + 1 -ACUCGAGCU-----------GCCGCCGCUUGCAGCACGCAAGUGAAAAAUGUUGGCGCCAGGCGCCACUAAAAAAUCUUAUGAAUGAAGUAGACACAUUUUU--C---UGUUGCGG -......(((-----------((........))))).(((((..(((((((((((((((...))))))(((.....((....))......)))..))))))))--)---..))))). ( -33.40) >DroWil_CAF1 58937 103 + 1 UACUCCAAUCC-----AAGAUGAUGACGAUAGCUGCACGCAAGUGAAAAAUGUUGGCGCCAGGCGCCACUAAAAAAUCUUAUGAAUGAAGUAGACACAUUUUU---------UGGUG ((((.((.((.-----(((((......((((....(((....))).....))))(((((...)))))........)))))..)).)).))))..(((......---------..))) ( -22.80) >DroMoj_CAF1 49656 101 + 1 -ACUCGAGCU-----------GCCG-UGCUUGCAGCACGCAAGAGAAAAAUGUUGGCGCCAGGCGCCACUAAAAAAUCUUAUGAAUGAAGUAGACACAUUUUU--U-GUUGCUACUG -......(((-----------((..-.....)))))..((((..(((((((((((((((...))))))(((.....((....))......)))..))))))))--)-.))))..... ( -28.50) >DroPer_CAF1 40576 113 + 1 -AGAUACUCCCCACAAAA---AACCACGAUUGCGGCACGCAAGUGAAAUAUGUUGGCGCCAGGCGCCACUAAAACAUCUUAUGAAUGAAGUAGACACAUUUUUUCGAGUUUCUGGUG -(((.((((.........---........(((((...)))))..((((.((((((((((...))))))(((...((((....).)))...)))..))))..)))))))).))).... ( -24.70) >consensus _ACUCAAGCC___________GCCGACGAUUGCAGCACGCAAGUGAAAAAUGUUGGCGCCAGGCGCCACUAAAAAAUCUUAUGAAUGAAGUAGACACAUUUUU__G___UGUUGCUG ....(((((..................)))))...(((....)))((((((((((((((...))))))(((.....((....))......)))..)))))))).............. (-17.86 = -17.84 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:41 2006