Locus 3106

Sequence ID 3L_DroMel_CAF1
Location 8,998,828 – 8,998,920
Length 92
Max. P 0.500000
window4843

overview

Window 3

Location 8,998,828 – 8,998,920
Length 92
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 84.29
Mean single sequence MFE -21.94
Consensus MFE -14.97
Energy contribution -15.13
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8998828 92 + 23771897
AAGC--GGCAAACAAAUAUGGCGCAAAGUCAAACAAA----------AACACGGCCAUUACUCAAUGGCGGCGAAGAGCGAGAAA-AAUUUAUGCUACCUCUGCA
..((--(.((........)).))).............----------......((((((....)))))).(((.((((((.((..-...)).))))..)).))). ( -18.60)
>DroPse_CAF1 51516 93 + 1
CGGGGUCGCAAACAAAUAUGGCGCAAAGUCAAACAAUA---------GGCACGGCCAUUACCUAAUGGCGGC--AAAGCGAGAAC-AAUUUAUGCUACCUCUGCA
.(((((.(((...........(((...(((........---------))).(.((((((....)))))).).--...))).....-......))).))))).... ( -24.95)
>DroEre_CAF1 38732 93 + 1
AAGC--GGCAAACAAAUAUGGCGCAAAGUCAAACAAA----------AACACGGCCAUUACUCAAUGGCGGCGGAGAGCGAGAAAAAAUUUAUGCUACCUCUGCA
..((--(.((........)).))).............----------......((((((....)))))).((((((((((.(((....))).))))..)))))). ( -25.70)
>DroYak_CAF1 39708 92 + 1
AAGC--GGCAAACAAAUAUGGCGCAAAGUCAAACAAA----------AACACGGCCAUUACUCAAUGGCGGCGUAGAGCGAGAAA-AAUUUAUGCUACCUCUGCA
..((--(.((........)).)))...(((...(...----------.....)((((((....)))))))))((((((..((...-........))..)))))). ( -21.90)
>DroAna_CAF1 36033 99 + 1
--UC--AACAAACAAAUAUGGCGCAAAGUCAAACAAAAAACCAAAAAAACAAAGCCAUUUCUCAAUGGCGGCCAA-AGCGAGAAA-AAUUUAUGCUACCUCUGCA
--..--............((((.....(.....)...................((((((....)))))).)))).-.(((((...-............))).)). ( -14.86)
>DroPer_CAF1 37191 93 + 1
CGGGGUCGCAAACAAAUAUGGCGCAAAGUCAAACAAUA---------GGCACGGCCAUUACCUAAUGGCGGA--AAAGCGAGAAC-AAUUUAUGCUACCUCUGCA
.(((((.(((...........(((...(((........---------))).(.((((((....)))))).).--...))).....-......))).))))).... ( -25.65)
>consensus
AAGC__GGCAAACAAAUAUGGCGCAAAGUCAAACAAA__________AACACGGCCAUUACUCAAUGGCGGCG_AGAGCGAGAAA_AAUUUAUGCUACCUCUGCA
.......(((........((((.....))))......................((((((....))))))((.....((((.(((....))).)))).))..))). (-14.97 = -15.13 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:40 2006