Locus 3105

Sequence ID 3L_DroMel_CAF1
Location 8,995,421 – 8,995,512
Length 91
Max. P 0.543672
window4842

overview

Window 2

Location 8,995,421 – 8,995,512
Length 91
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 76.11
Mean single sequence MFE -25.20
Consensus MFE -14.79
Energy contribution -15.40
Covariance contribution 0.61
Combinations/Pair 1.18
Mean z-score -1.42
Structure conservation index 0.59
SVM decision value 0.02
SVM RNA-class probability 0.543672
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8995421 91 - 23771897
AGCAGCCGUGCGAGAAAGAAGCCGAGGGCUCGUGCUCC-CACCUGCCCCC---------UUUAUAGC-CGAUAUACACA-UGUAUCGGGUUCAUUUCGCAACU
........(((((((..(((.(((.((((..(((....-)))..)))).)---------........-.((((((....-)))))))).))).)))))))... ( -28.20)
>DroSec_CAF1 34687 91 - 1
AGCAGCCGUGCGAGAAAGAAGCCGAGGGCUCGUGCUCC-CACCUGCCCCC---------UUUAUAGC-CGAUAUACCCA-UAUAUCGGGUUCAUUUCGCAACU
........(((((((..(((.(((.((((..(((....-)))..)))).)---------........-.((((((....-)))))))).))).)))))))... ( -28.20)
>DroSim_CAF1 35232 91 - 1
AGCAACCGUGCGAGAAAGAAGCCGAGGGCUCGUGCUCC-CACCUGCCCCC---------UUUAUAGC-CGAUAUGCCCA-UAUAUCGGGAUCAUUUCGCAACU
........(((((((..((((..(.((((..(((....-)))..))))))---------)))....(-(((((((....-)))))))).....)))))))... ( -27.60)
>DroEre_CAF1 35245 85 - 1
AGCAGCCGUGCGAGAAAGAAGCCGAGGGCUCCUGCUCC-CACCUGCCCCCCAAA-----------------UGUACCCAUUAUAUCGGGUUCAUUUCGCAACU
.((((..(((.(((..((.((((...)))).)).))).-))))))).....(((-----------------((.((((........)))).)))))....... ( -24.20)
>DroYak_CAF1 36135 101 - 1
AGCAGCCGUGCGAGAAAGAUGCCGAGGGCUCGUGCUCC-CACCUUCCCCCCCAAUACCCUAUAUAGCCCGAUAUACCCA-CAUAUCGGGUUCAUUUCGCAACU
.((....(((.(((...((.(((...)))))...))).-)))......................((((((((((.....-.))))))))))......)).... ( -26.70)
>DroPer_CAF1 34371 72 - 1
AACAGCCGUGUGAGAAAG------AGGGCUCGUGCUUCUCAAGUACUCCA--------------AUC-CGAGAUCUUA----------ACUCAUUUCGCAACU
....((...(((((...(------(((((....)).))))(((..(((..--------------...-.)))..))).----------.)))))...)).... ( -16.30)
>consensus
AGCAGCCGUGCGAGAAAGAAGCCGAGGGCUCGUGCUCC_CACCUGCCCCC_________UUUAUAGC_CGAUAUACCCA_UAUAUCGGGUUCAUUUCGCAACU
........(((((((..........((((..(((.....)))..))))...........................(((........)))....)))))))... (-14.79 = -15.40 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:39 2006