Locus 31

Sequence ID 3L_DroMel_CAF1
Location 113,117 – 113,229
Length 112
Max. P 0.913151
window38

overview

Window 8

Location 113,117 – 113,229
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.25
Mean single sequence MFE -21.59
Consensus MFE -13.78
Energy contribution -13.98
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -2.49
Structure conservation index 0.64
SVM decision value 1.09
SVM RNA-class probability 0.913151
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 113117 112 + 23771897
UAUACGUAUA------AUUACCAUUUGCAAUCACAAAGGUUUUGCAACUGUCGCCGGGCGGUGAAAACUCAAGUGAAUAAAUAUCGCAAAGUGAAGCAAAUAAAA--AAAUAUUACAAAA
.....(((..------......((((((..((((...((((((...((((((....)))))).))))))...((((.......))))...)))).))))))....--......))).... ( -22.07)
>DroSec_CAF1 48789 112 + 1
UAUACGU--A------AUUACAAUUUGCAAUCACAAAGGUUUUACAACUGUCGCCGGGCGGUGAAAACUCAAGUGAAUAAAUAUCGCAAAGCGAAGCCAAUAAAACAAAUUAUUACAAAA
.....((--(------((...((((((...((((...((((((...((((((....)))))).))))))...)))).......((((...))))...........))))))))))).... ( -24.00)
>DroSim_CAF1 54550 114 + 1
UAUACGUAUA------AUUACAAUUUGCAAUCACAAAGGUUUUACAACUGUCGCCGGGCGGUGAAAACUCAAGUGAAUAAAUAUCGCAAAGCGAAGCCAAUACAACAAAUUAUUACAAAA
.....(((..------..)))((((((...((((...((((((...((((((....)))))).))))))...)))).......((((...))))...........))))))......... ( -22.20)
>DroEre_CAF1 71329 110 + 1
UAUACGUAUACUUACAAUUAUAAUUCGCAAUCACAAAGGUUUUACAACUGUCGCCGGACGGUGAAAA--CAAGUGAAGAAAUA----AAAGCGAAGAAAAAAA----AAGUAAUAGAAAA
..((((((....)))........(((((..((((....(((((...((((((....)))))).))))--)..))))(....).----...)))))........----..)))........ ( -22.10)
>DroYak_CAF1 66490 112 + 1
UAUACGUAUACUUACAAUUAUAAUUCGGAAUCGCAAAGGUUUUACAACUGUCGCCGGACGGUGAAAACACAAGUGAACAAAUA----AAAGUCAAGCAAAUAA----AAAUUAUAGAAAA
.....(((....)))..((((((((.....((((....(((((...((((((....)))))).)))))....)))).......----...(.....)......----.)))))))).... ( -17.60)
>consensus
UAUACGUAUA______AUUACAAUUUGCAAUCACAAAGGUUUUACAACUGUCGCCGGGCGGUGAAAACUCAAGUGAAUAAAUAUCGCAAAGCGAAGCAAAUAAAA__AAAUAUUACAAAA
..............................((((...((((((...((((((....)))))).))))))...))))............................................ (-13.78 = -13.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:18 2006