Locus 3099

Sequence ID 3L_DroMel_CAF1
Location 8,974,466 – 8,974,574
Length 108
Max. P 0.882230
window4830

overview

Window 0

Location 8,974,466 – 8,974,574
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 96.60
Mean single sequence MFE -20.88
Consensus MFE -18.60
Energy contribution -18.48
Covariance contribution -0.13
Combinations/Pair 1.06
Mean z-score -2.25
Structure conservation index 0.89
SVM decision value 0.92
SVM RNA-class probability 0.882230
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8974466 108 + 23771897
AAUAAGCAAUUAAUAUUUAAUAGAAUCAGAAAAUAAUUAUAUUUAAUUGACUGAAAAUGUUAAAUGCAUUUUGCAAUCUCCAGCAGGUGCCAAGAACAUUGUCCAGCA
.....((((....(((((((((...((((....((((((....)))))).))))...)))))))))....))))........((.((...(((.....))).)).)). ( -18.80)
>DroSec_CAF1 13571 108 + 1
AAUAAGCAAUUAAUAUUUAAUAGAAUCAGACUAUAAUUAUAUUUAAUUGACUGAAAAUGUUAAAUGCACUUUGCAAUCUCCAGCAGGUGCCAAGAACAUUGUCCAGAA
......((((((((((...((((.......))))....))).))))))).(((..((((((....((((((.((........))))))))....))))))...))).. ( -21.70)
>DroSim_CAF1 14217 108 + 1
AAUAAGCAAUUAAUAUUUAAUAGAAUCAGACUAUAAUUAUAUUUAAUUGACUGAAAAUGUUAAAUGCACUUUGCAAUCUCCAGCAGGUGCCAAGAACAUUGUCCAGAA
......((((((((((...((((.......))))....))).))))))).(((..((((((....((((((.((........))))))))....))))))...))).. ( -21.70)
>DroEre_CAF1 13930 108 + 1
AAUAAGCAAUUAAUAGUUAAUAGGAUCAGACAAUAAUUAUAUUUAAUUAACUGAAAAUGUUAAAUGCACUUUGCAAUCUCCAGCAGGUGCCAAGAACAUUGUCCAGAA
......................(((((((....((((((....)))))).)))).((((((....((((((.((........))))))))....)))))).))).... ( -21.30)
>consensus
AAUAAGCAAUUAAUAUUUAAUAGAAUCAGACAAUAAUUAUAUUUAAUUGACUGAAAAUGUUAAAUGCACUUUGCAAUCUCCAGCAGGUGCCAAGAACAUUGUCCAGAA
.....(((((....((((((((...((((....((((((....)))))).))))...))))))))((((((.((........)))))))).......)))))...... (-18.60 = -18.48 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:28 2006