Locus 3097

Sequence ID 3L_DroMel_CAF1
Location 8,972,262 – 8,972,353
Length 91
Max. P 0.683225
window4828

overview

Window 8

Location 8,972,262 – 8,972,353
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 79.71
Mean single sequence MFE -27.55
Consensus MFE -22.39
Energy contribution -22.40
Covariance contribution 0.01
Combinations/Pair 1.38
Mean z-score -1.20
Structure conservation index 0.81
SVM decision value 0.31
SVM RNA-class probability 0.683225
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8972262 91 - 23771897
UGACCAGAGCGUUUGUUUUUGUCGGGAUUGUGGCCGUUCCGGGAUGUAUUUAUCGUUUCAAUCACUUCCUCGAGCUGAACGCUAUCCCAGA
.(((.(((((....))))).)))(((((.(((..(((((.((((.((..((........))..)).)))).)))).)..))).)))))... ( -27.20)
>DroPse_CAF1 27130 86 - 1
GUUUGUGUGCG-----UUUCGUUGGGAUUUUCGCGGUGCUAGUGGUUUAUUACAGUAUGUAGAACUUGCAUGUACUGCUGUGUGUGCCAAA
...........-----.....((((.((...((((((((....(((((..(((.....)))))))).....))))))).)...)).)))). ( -19.30)
>DroSec_CAF1 11371 91 - 1
UGGCGAGGGCGUUUGUUUUCGUUGGGAUUGUGGCCGUUCCGGGAUGUAUUUAUCGUUUCAAUCACUUCCUCGAGCUGAACGCUAUCCCAGA
.(((((((((....)))))))))(((((.(((..(((((.((((.((..((........))..)).)))).)))).)..))).)))))... ( -29.00)
>DroSim_CAF1 12021 91 - 1
UGGCGAGGGCGUUUGUUUUCGUUGGGAUUGUGGCCGUUCCGGGAUGUAUUUAUCGUUUCAAUCACUUCCUCGAGCUGAACGCUAUCCCAGA
.(((((((((....)))))))))(((((.(((..(((((.((((.((..((........))..)).)))).)))).)..))).)))))... ( -29.00)
>DroEre_CAF1 11728 91 - 1
UGGCGAGGGCGUUUGUUUUCGUUGGGAUUGUGGCUGUUCCGGGACGUAUUUAUUGCUUCAAUCACUUCCUCGAGCUGAACGCUAUCCCAGA
.(((((((((....)))))))))(((((.(((...((((.((((.((..((........))..)).)))).))))....))).)))))... ( -28.70)
>DroYak_CAF1 12262 91 - 1
UGGCGAGGGCGUUUGUUUUCGUUGGGAUUGUGCCUGUUCCGGGACGUAUUUAUCGUCUCAAUCACUUCCUCGAGCUGAGCGCUAUCCCAGG
.(((((((((....)))))))))(((((.(((((.((((.((((.((..((........))..)).)))).)))).).)))).)))))... ( -32.10)
>consensus
UGGCGAGGGCGUUUGUUUUCGUUGGGAUUGUGGCCGUUCCGGGAUGUAUUUAUCGUUUCAAUCACUUCCUCGAGCUGAACGCUAUCCCAGA
.(((((((((....)))))))))(((((.(((...((((.((((.((..((........))..)).)))).))))....))).)))))... (-22.39 = -22.40 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:26 2006